Non-Coding RNA Search

Ss1.1-Pig2-54D19.5

Sequence:


               
               GCGTCCAGTCGCTGTGGGGCTCCCTCAAGCCCAATCGGCTGGGGTCCCACACCCCCTGAA
GCCCCCGGTCCTCCCTACACCTGCTTGCGTTGGGTCCTGGGGAACTCAAGGTACGGGGCA
GGGAGGGGCTCTGCCGGCCATACCTAGACCTCGGGCCCCCCATAGCTGCCCCTTCCCCAG
TAGCTGGGGTTCCCTGCCTAGGGGCTGGGGAGGGAGATCCGTCAGGCGAGGAAGTGGCCA
CATGGATTAATGAGAAGAGGCGCAGGAAGCAAGGCCAGCCCCAGGCCCTCTACTCCCACG
TTTCTGGGGGTGCAGGAGGACCTGGTCTATGCCATGCCCCACCTTCCTAGGGTCCTGCGG
GGGCAGGAGGGGACTGGTCACATGCATGGGTCCCCTCCCCTCTGCTCCACGGCACTTCTG
CTGTACTGATATCACTAATAAAGTCTGTCTGCCCTGCTGAGCTGTGTGCCTCCCGGCGTC
CGCACATCCGTCACTCCGGGTACCCCGATCCCTCAGTTAGGGTCTCGTTCCCAGTGCCTT
ACCTGCCTCGAGAGAAATTGGGAC------------------------------------
------------------------GTTGGGGGTTTAAGCCCTGGCCTGGGAGCTTCTGCA
TGCTGTGGGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGTCCAGTCGCTGTGGGGCTCCCTCAAGCCCAATCGGCTGGGGTCCCACACCCCCTGAA
GCCCCCGGTCCTCCCTACACCTGCTTGCGTTGGGTCCTGGGGAACTCAAGGTACGGGGCA
GGGAGGGGCTCTGCCGGCCATACCTAGACCTCGGGCCCCCCATAGCTGCCCCTTCCCCAG
TAGCTGGGGTTCCCTGCCTAGGGGCTGGGGAGGGAGATCCGTCAGGCGAGGAAGTGGCCA
CATGGATTAATGAGAAGAGGCGCAGGAAGCAAGGCCAGCCCCAGGCCCTCTACTCCCACG
TTTCTGGGGGTGCAGGAGGACCTGGTCTATGCCATGCCCCACCTTCCTAGGGTCCTGCGG
GGGCAGGAGGGGACTGGTCACATGCATGGGTCCCCTCCCCTCTGCTCCACGGCACTTCTG
CTGTACTGATATCACTAATAAAGTCTGTCTGCCCTGCTGAGCTGTGTGCCTCCCGGCGTC
CGCACATCCGTCACTCCGGGTACCCCGATCCCTCAGTTAGGGTCTCGTTCCCAGTGCCTT
ACCTGCCTCGAGAGAAATTGGGAC------------------------------------
------------------------GTTGGGGGTTTAAGCCCTGGCCTGGGAGCTTCTGCA
TGCTGTGGGTGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               118-223, - strand, RNAz p=0.998731
               

               
               263-408, - strand, RNAz p=0.972243

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-223, - strand, RNAz p=0.998731
               

               
               263-408, - strand, RNAz p=0.972243

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               378-445, + strand, RNAmicro p=0.999413
               

               
               271-389, - strand, RNAmicro p=0.998655
               

               
               93-204, + strand, RNAmicro p=0.996677

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               378-445, + strand, RNAmicro p=0.999413
               

               
               271-389, - strand, RNAmicro p=0.998655
               

               
               93-204, + strand, RNAmicro p=0.996677

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-538, gnl|bosTau2|chr15 (28625393-28624841)
               

               
               1-538, gnl|Hg17|chr11 (6373398-6372855)
               

               
               1-538, gnl|Mm7|chr7 (101615362-101614850)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-538, gnl|bosTau2|chr15 (28625393-28624841)
               

               
               1-538, gnl|Hg17|chr11 (6373398-6372855)
               

               
               1-538, gnl|Mm7|chr7 (101615362-101614850)

	118-223, - strand, RNAz p=0.998731
	263-408, - strand, RNAz p=0.972243

	378-445, + strand, RNAmicro p=0.999413
	271-389, - strand, RNAmicro p=0.998655
	93-204, + strand, RNAmicro p=0.996677

	1-538, gnl\|bosTau2\|chr15 (28625393-28624841)
	1-538, gnl\|Hg17\|chr11 (6373398-6372855)
	1-538, gnl\|Mm7\|chr7 (101615362-101614850)