Non-Coding RNA Search

Ss1.1-Pig2-55D20.5

Sequence:


               
               GCCGGCTCCGATGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCACGTAGCCAGAGAGCG
TGTCTGCACTGGGATCCTCGTCACCCCAGGCTGGGTCCTGGCGGCCACTCACTGTGTCCT
CAGGCCAGGCTCTACCACAGTGCCTTATATTGAAGTGTACCTAGGCCGGGCAGGGGCCAG
CCCCCTCCCGCAGAGCCACCAGCTATCCCGATCCATCATCAGCATCCGCCTGCCCCGGCA
CCTGGGACTCCGGCCCCCGCTGGCCCTCCTAGAGCTGAGCTCCCGGGTGGAGCCCTCCCC
ATCAGCCTTGCCCATCTGCCTTCAGCCAGGTGGTCTCCCCTTGGGGGCCAGCTGCTGGGT
GCTGGGCTGGAAGGACCCCCAGGACCGAGTCCCTGTGGCTGCTGCTGTCTCCATCTTGAC
AGCGCGACTCTGTCACTGCCTCTATCAGGGCATTCTGCCCCCTGGAACTCTCTGTGTCCT
GTATGCAGAGGGGCAGGAGGACAGCTGTGAGGTGACCTCAGCCCCGCCACTCCTGTGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGCTCCGATGGGGGTCCTGTGGCCCTGGCTGGCAGAGGTGCACGTAGCCAGAGAGCG
TGTCTGCACTGGGATCCTCGTCACCCCAGGCTGGGTCCTGGCGGCCACTCACTGTGTCCT
CAGGCCAGGCTCTACCACAGTGCCTTATATTGAAGTGTACCTAGGCCGGGCAGGGGCCAG
CCCCCTCCCGCAGAGCCACCAGCTATCCCGATCCATCATCAGCATCCGCCTGCCCCGGCA
CCTGGGACTCCGGCCCCCGCTGGCCCTCCTAGAGCTGAGCTCCCGGGTGGAGCCCTCCCC
ATCAGCCTTGCCCATCTGCCTTCAGCCAGGTGGTCTCCCCTTGGGGGCCAGCTGCTGGGT
GCTGGGCTGGAAGGACCCCCAGGACCGAGTCCCTGTGGCTGCTGCTGTCTCCATCTTGAC
AGCGCGACTCTGTCACTGCCTCTATCAGGGCATTCTGCCCCCTGGAACTCTCTGTGTCCT
GTATGCAGAGGGGCAGGAGGACAGCTGTGAGGTGACCTCAGCCCCGCCACTCCTGTGCCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               233-389, - strand, RNAz p=0.64094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               233-389, - strand, RNAz p=0.64094

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               295-385, - strand, RNAmicro p=0.992102

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               295-385, - strand, RNAmicro p=0.992102

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               113-389, gnl|bosTau2|chr25 (23001022-23000746)
               

               
               113-389, gnl|Hg17|chr16 (31059590-31059314)
               

               
               113-389, gnl|Mm7|chr7 (124030401-124030125)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-389, gnl|bosTau2|chr25 (23001022-23000746)
               

               
               113-389, gnl|Hg17|chr16 (31059590-31059314)
               

               
               113-389, gnl|Mm7|chr7 (124030401-124030125)

	113-389, gnl\|bosTau2\|chr25 (23001022-23000746)
	113-389, gnl\|Hg17\|chr16 (31059590-31059314)
	113-389, gnl\|Mm7\|chr7 (124030401-124030125)