Non-Coding RNA Search

Ss1.1-Pig2-55K14.5

Sequence:


               
               CTTTTCTTAAGACGCTGCGCAGAGATTTTCCCCAGGAACGCTGTCCCGTGGTGCTTGCAC
CACTTTTATACCCTGAAAAACGGGACATTCTAATGGACAGAATCCTGCCTGATTCTGGAG
GGGTAGCTAAAACCATGATGGAGAGCTCTTTGGCTGATTTCATGCAAGAAGTAGGCTATG
GCTTTTGTGCAAGCATTGAAGAATGTCGCAATATAATCATGCAATTTGGTGTTCGGGAGG
TCACAGCTGCCCAGGTTGCAAGGGTTTTGGGAATGATGGCTCGTACTCATTCAGGATTAA
CAGATGGAATTCCATTACAGAGTATCTCTGCTCCTGGCAGTGGGATCTGGAGTGATGGAA
AAGATAAAAGTGATGGAGCACAGGCACATACATGGAATGTAGAAGTCTTGATTGATGTTC
TCAAAGAACTGAACCCGAGTTTGAATTTCAAGGAAGTAACTTATGAATTGGACCATCCTG
GATTTCAAATTCGTGACAGTAAGGGACTTCATAATGTGGTGTATGGCATTCAGAGGGGTC
TAGGTATGGAAGTGTTCCCTGTAGACCTCATATACAGACCTTGGAAACATGCCGAAGGCC
AGCTCTCCTTCATTCAGCATTCCCTTATAAACCCAGAGATCTTCTGTTTTGCCGACTATC
CCTGTCATACTGTTGCCACTGATATCCTGAAAGCACCACCAGAGGATGACAATCGAGAAA
TTGCCACATGGAAGAGCTTGGATTTGATTGAATCTCTTCTGAGGCTCGCAGAGGTGGGGC
AATATGAGCAAGTCAAACAGCTCTTCAGCTTCCCTATCAAACACTGTCCAGACATGCTGG
TATTGGCCTTACTACAAATAAACACCTCCTGGCACACCTTACGCCATGAACTCATCTCCA
CTCTGATGCCAATTTTCCTTGGAAACCACCCTAACTCAGCTATAATTTTGCACTATGCAT
GGCATGGGCAGGGACAGTCTCCCTCAATCCGCCAACTTATCATGCATGCAATGGCAGAAT
GGTACATGCGAGGGGAGCAGTATGACCAGGCCAAATTGTCTCGAATACTTGATGTGGCCC
AGGACTTGAAGGCCTTGTCAATGCTGCTAAATGGTACTCCATTTGCCTTTGTTATTGACC
TTGCTGCACTTGCTTCACGTCGTGAATACCTCAAACTTGACAAGTGGCTCACAGATAAGA
TTCGAGAGCATGGAGAGCCTTTTATCCAGGCTTGTATGACTTTTTTAAAGAGACGGTGTC
CTTCCATTTTGGGTGGACTTGCCCCAGAGAAAGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTCTTAAGACGCTGCGCAGAGATTTTCCCCAGGAACGCTGTCCCGTGGTGCTTGCAC
CACTTTTATACCCTGAAAAACGGGACATTCTAATGGACAGAATCCTGCCTGATTCTGGAG
GGGTAGCTAAAACCATGATGGAGAGCTCTTTGGCTGATTTCATGCAAGAAGTAGGCTATG
GCTTTTGTGCAAGCATTGAAGAATGTCGCAATATAATCATGCAATTTGGTGTTCGGGAGG
TCACAGCTGCCCAGGTTGCAAGGGTTTTGGGAATGATGGCTCGTACTCATTCAGGATTAA
CAGATGGAATTCCATTACAGAGTATCTCTGCTCCTGGCAGTGGGATCTGGAGTGATGGAA
AAGATAAAAGTGATGGAGCACAGGCACATACATGGAATGTAGAAGTCTTGATTGATGTTC
TCAAAGAACTGAACCCGAGTTTGAATTTCAAGGAAGTAACTTATGAATTGGACCATCCTG
GATTTCAAATTCGTGACAGTAAGGGACTTCATAATGTGGTGTATGGCATTCAGAGGGGTC
TAGGTATGGAAGTGTTCCCTGTAGACCTCATATACAGACCTTGGAAACATGCCGAAGGCC
AGCTCTCCTTCATTCAGCATTCCCTTATAAACCCAGAGATCTTCTGTTTTGCCGACTATC
CCTGTCATACTGTTGCCACTGATATCCTGAAAGCACCACCAGAGGATGACAATCGAGAAA
TTGCCACATGGAAGAGCTTGGATTTGATTGAATCTCTTCTGAGGCTCGCAGAGGTGGGGC
AATATGAGCAAGTCAAACAGCTCTTCAGCTTCCCTATCAAACACTGTCCAGACATGCTGG
TATTGGCCTTACTACAAATAAACACCTCCTGGCACACCTTACGCCATGAACTCATCTCCA
CTCTGATGCCAATTTTCCTTGGAAACCACCCTAACTCAGCTATAATTTTGCACTATGCAT
GGCATGGGCAGGGACAGTCTCCCTCAATCCGCCAACTTATCATGCATGCAATGGCAGAAT
GGTACATGCGAGGGGAGCAGTATGACCAGGCCAAATTGTCTCGAATACTTGATGTGGCCC
AGGACTTGAAGGCCTTGTCAATGCTGCTAAATGGTACTCCATTTGCCTTTGTTATTGACC
TTGCTGCACTTGCTTCACGTCGTGAATACCTCAAACTTGACAAGTGGCTCACAGATAAGA
TTCGAGAGCATGGAGAGCCTTTTATCCAGGCTTGTATGACTTTTTTAAAGAGACGGTGTC
CTTCCATTTTGGGTGGACTTGCCCCAGAGAAAGATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               23-142, - strand, RNAz p=0.908175
               

               
               89-193, + strand, RNAz p=0.984301

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               23-142, - strand, RNAz p=0.908175
               

               
               89-193, + strand, RNAz p=0.984301

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               23-193, gnl|bosTau2|chr18 (23250627-23250457)
               

               
               23-193, gnl|canFam2|chr2 (60958084-60957887)
               

               
               23-193, gnl|danRer3|chrUn (105314994-105315177)
               

               
               23-193, gnl|dasNov1|scaffold_14187 (47447-47252)
               

               
               23-193, gnl|echTel1|scaffold_269768 (12508-12311)
               

               
               23-193, gnl|fr1|chrUn (279573024-279573197)
               

               
               23-193, gnl|galGal2|chr11 (1382252-1382440)
               

               
               23-193, gnl|hg17|chr16 (57176728-57176925)
               

               
               23-193, gnl|Hg17|chr16 (57176913-57176743)
               

               
               23-193, gnl|loxAfr1|scaffold_53402 (31173-30976)
               

               
               23-193, gnl|mm7|chr8 (94359481-94359678)
               

               
               23-193, gnl|Mm7|chr8 (94359666-94359496)
               

               
               23-193, gnl|monDom2|scaffold_63 (8333214-8333410)
               

               
               23-193, gnl|oryCun1|scaffold_157274 (13370-13173)
               

               
               23-193, gnl|panTro1|chr18 (51296461-51296658)
               

               
               23-193, gnl|rheMac2|chr20 (56944158-56944355)
               

               
               23-193, gnl|rn3|chr19 (9751544-9751347)
               

               
               23-193, gnl|tetNig1|chrUn_random (139861799-139861626)
               

               
               23-193, gnl|xenTro1|scaffold_671 (598902-598703)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-193, gnl|bosTau2|chr18 (23250627-23250457)
               

               
               23-193, gnl|canFam2|chr2 (60958084-60957887)
               

               
               23-193, gnl|danRer3|chrUn (105314994-105315177)
               

               
               23-193, gnl|dasNov1|scaffold_14187 (47447-47252)
               

               
               23-193, gnl|echTel1|scaffold_269768 (12508-12311)
               

               
               23-193, gnl|fr1|chrUn (279573024-279573197)
               

               
               23-193, gnl|galGal2|chr11 (1382252-1382440)
               

               
               23-193, gnl|hg17|chr16 (57176728-57176925)
               

               
               23-193, gnl|Hg17|chr16 (57176913-57176743)
               

               
               23-193, gnl|loxAfr1|scaffold_53402 (31173-30976)
               

               
               23-193, gnl|mm7|chr8 (94359481-94359678)
               

               
               23-193, gnl|Mm7|chr8 (94359666-94359496)
               

               
               23-193, gnl|monDom2|scaffold_63 (8333214-8333410)
               

               
               23-193, gnl|oryCun1|scaffold_157274 (13370-13173)
               

               
               23-193, gnl|panTro1|chr18 (51296461-51296658)
               

               
               23-193, gnl|rheMac2|chr20 (56944158-56944355)
               

               
               23-193, gnl|rn3|chr19 (9751544-9751347)
               

               
               23-193, gnl|tetNig1|chrUn_random (139861799-139861626)
               

               
               23-193, gnl|xenTro1|scaffold_671 (598902-598703)

	23-142, - strand, RNAz p=0.908175
	89-193, + strand, RNAz p=0.984301

	23-193, gnl\|bosTau2\|chr18 (23250627-23250457)
	23-193, gnl\|canFam2\|chr2 (60958084-60957887)
	23-193, gnl\|danRer3\|chrUn (105314994-105315177)
	23-193, gnl\|dasNov1\|scaffold_14187 (47447-47252)
	23-193, gnl\|echTel1\|scaffold_269768 (12508-12311)
	23-193, gnl\|fr1\|chrUn (279573024-279573197)
	23-193, gnl\|galGal2\|chr11 (1382252-1382440)
	23-193, gnl\|hg17\|chr16 (57176728-57176925)
	23-193, gnl\|Hg17\|chr16 (57176913-57176743)
	23-193, gnl\|loxAfr1\|scaffold_53402 (31173-30976)
	23-193, gnl\|mm7\|chr8 (94359481-94359678)
	23-193, gnl\|Mm7\|chr8 (94359666-94359496)
	23-193, gnl\|monDom2\|scaffold_63 (8333214-8333410)
	23-193, gnl\|oryCun1\|scaffold_157274 (13370-13173)
	23-193, gnl\|panTro1\|chr18 (51296461-51296658)
	23-193, gnl\|rheMac2\|chr20 (56944158-56944355)
	23-193, gnl\|rn3\|chr19 (9751544-9751347)
	23-193, gnl\|tetNig1\|chrUn_random (139861799-139861626)
	23-193, gnl\|xenTro1\|scaffold_671 (598902-598703)