Ss1.1-Pig2-55L11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTGCCCAGTCTTGGTTATTTTATTGAGCGGGTAGGGGCTGACAGAAGGAGGTTCCTG AGTGGAGGCAGGTCTCTGACTTCAGTGAGTGGGTGGAAGACACCCATTTCATTTCAAGAG AAAAGCAAAGGAATAGTGGACATGGGTTAAGGGAAAGATGAGTTTCGTTTTGGATAACTT ACCTTGATTTAGAAAGATATAGTACACACAATATGAGTCTGGAGCTCTTGGGAAAGCAGA ATGGTTACGCAAGAGAATGAAATCATAGTTGAGTTTGACTATTAATGCTGACTATTACCA GTTTTCTCAGTCCATCAAAGGGATCTTCTGCCTTTAACACAAACGAAGCATCATGCTGAA GAGGGAGAAGGTCCGACGTTACACGAAACCCCTGGATGGAGGCTGGGGATGGATGGTTGT GTTTCATTTCTTCCTGGTCAATGTGTTTGTGATGGGGATGACCAAGACTTTTGCAATCTT CTTTGTGGTTTTTCAAGAAGAGTTTGAAGGCACCTCTGAGCAAATTGGTTGGATTGGATC AATCATGTCGTCACTTCGTTTTTCTGCAGGTCCCCTAGCTGCCATTATTTACGACATAAT TGGAGCGAAAACTGCCTCAATTTTGGGGGCTCTCCTTGTGACTGGTGGATATCTGATCAG CAGCCAGGCCACAAGCATTCCCTTCCTCTGTGTGACTATGGGATTTTTACCTGGTTTGGG TTCTGCTTTCTTGTACCAAACGGCTACTGTGGTAACTACAAAATACTTCAAAAAAACGAT TAGCTTTTGCTACAGCGATTGCCCGTTCGGGGATGGGACTGACGTTTTTGTTAGCACCCT TTACAAAAGTCCTGTTAGATCGCTATGACTGGACAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTGCCCAGTCTTGGTTATTTTATTGAGCGGGTAGGGGCTGACAGAAGGAGGTTCCTG AGTGGAGGCAGGTCTCTGACTTCAGTGAGTGGGTGGAAGACACCCATTTCATTTCAAGAG AAAAGCAAAGGAATAGTGGACATGGGTTAAGGGAAAGATGAGTTTCGTTTTGGATAACTT ACCTTGATTTAGAAAGATATAGTACACACAATATGAGTCTGGAGCTCTTGGGAAAGCAGA ATGGTTACGCAAGAGAATGAAATCATAGTTGAGTTTGACTATTAATGCTGACTATTACCA GTTTTCTCAGTCCATCAAAGGGATCTTCTGCCTTTAACACAAACGAAGCATCATGCTGAA GAGGGAGAAGGTCCGACGTTACACGAAACCCCTGGATGGAGGCTGGGGATGGATGGTTGT GTTTCATTTCTTCCTGGTCAATGTGTTTGTGATGGGGATGACCAAGACTTTTGCAATCTT CTTTGTGGTTTTTCAAGAAGAGTTTGAAGGCACCTCTGAGCAAATTGGTTGGATTGGATC AATCATGTCGTCACTTCGTTTTTCTGCAGGTCCCCTAGCTGCCATTATTTACGACATAAT TGGAGCGAAAACTGCCTCAATTTTGGGGGCTCTCCTTGTGACTGGTGGATATCTGATCAG CAGCCAGGCCACAAGCATTCCCTTCCTCTGTGTGACTATGGGATTTTTACCTGGTTTGGG TTCTGCTTTCTTGTACCAAACGGCTACTGTGGTAACTACAAAATACTTCAAAAAAACGAT TAGCTTTTGCTACAGCGATTGCCCGTTCGGGGATGGGACTGACGTTTTTGTTAGCACCCT TTACAAAAGTCCTGTTAGATCGCTATGACTGGACAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 11-130, + strand, RNAz p=0.873327 | |
| 436-554, + strand, RNAz p=0.872942 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 11-130, + strand, RNAz p=0.873327 | |
| 436-554, + strand, RNAz p=0.872942 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 11-270, gnl|bosTau2|chr3 (29695036-29694783) | |
| 11-270, gnl|Hg17|chr1 (110640306-110640076) | |
| 436-571, gnl|bosTau2|chr3 (29693073-29692938) | |
| 436-571, gnl|canFam2|chr6 (44672167-44671972) | |
| 436-571, gnl|danRer3|chr8 (17352299-17352132) | |
| 436-571, gnl|dasNov1|scaffold_73649 (6970-7162) | |
| 436-571, gnl|echTel1|scaffold_297935 (2939-2776) | |
| 436-571, gnl|fr1|chrUn (41935729-41935557) | |
| 436-571, gnl|galGal2|chr26 (92802-92963) | |
| 436-571, gnl|hg17|chr1 (110637478-110637670) | |
| 436-571, gnl|Hg17|chr1 (110637631-110637496) | |
| 436-571, gnl|loxAfr1|scaffold_2202 (136020-136211) | |
| 436-571, gnl|mm7|chr3 (107116387-107116203) | |
| 436-571, gnl|Mm7|chr3 (107116232-107116367) | |
| 436-571, gnl|monDom2|scaffold_0 (5780442-5780265) | |
| 436-571, gnl|oryCun1|scaffold_209241 (47242-47050) | |
| 436-571, gnl|panTro1|chr1_random (5012707-5012515) | |
| 436-571, gnl|rheMac2|chr1 (113449719-113449911) | |
| 436-571, gnl|rn3|chr2 (202734674-202734496) | |
| 436-571, gnl|tetNig1|chr9 (3043399-3043535) | |
| 713-876, gnl|bosTau2|chr3 (29691983-29691821) | |
| 713-876, gnl|Hg17|chr1 (110635808-110635646) | |
| 713-876, gnl|Mm7|chr3 (107117407-107117569) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 11-270, gnl|bosTau2|chr3 (29695036-29694783) | |
| 11-270, gnl|Hg17|chr1 (110640306-110640076) | |
| 436-571, gnl|bosTau2|chr3 (29693073-29692938) | |
| 436-571, gnl|canFam2|chr6 (44672167-44671972) | |
| 436-571, gnl|danRer3|chr8 (17352299-17352132) | |
| 436-571, gnl|dasNov1|scaffold_73649 (6970-7162) | |
| 436-571, gnl|echTel1|scaffold_297935 (2939-2776) | |
| 436-571, gnl|fr1|chrUn (41935729-41935557) | |
| 436-571, gnl|galGal2|chr26 (92802-92963) | |
| 436-571, gnl|hg17|chr1 (110637478-110637670) | |
| 436-571, gnl|Hg17|chr1 (110637631-110637496) | |
| 436-571, gnl|loxAfr1|scaffold_2202 (136020-136211) | |
| 436-571, gnl|mm7|chr3 (107116387-107116203) | |
| 436-571, gnl|Mm7|chr3 (107116232-107116367) | |
| 436-571, gnl|monDom2|scaffold_0 (5780442-5780265) | |
| 436-571, gnl|oryCun1|scaffold_209241 (47242-47050) | |
| 436-571, gnl|panTro1|chr1_random (5012707-5012515) | |
| 436-571, gnl|rheMac2|chr1 (113449719-113449911) | |
| 436-571, gnl|rn3|chr2 (202734674-202734496) | |
| 436-571, gnl|tetNig1|chr9 (3043399-3043535) | |
| 713-876, gnl|bosTau2|chr3 (29691983-29691821) | |
| 713-876, gnl|Hg17|chr1 (110635808-110635646) | |
| 713-876, gnl|Mm7|chr3 (107117407-107117569) |