Ss1.1-Pig2-56M09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGGGACCGTGCGCGCCTTTGACCTTCACAGGTACCGGAACTTCCGCACCTTCACGTCC CCGCGCCCCACCCAGTTCTCCTGCGTGGCCGTGGACACCAGCGGGGAGGTGGTTGCTGCG GGCGCCCAGGACTCCTTCGAGATCTTCATCTGGTCCATGCAGACGGGCAGGCTCCTTGAC GTGCTCTCCGGCCACGAGGGGCCCATCAGTGGTCTTTGCTTTAACCCCACGAAGTCGGTG CTGGCCAGCGCCTCCTGGGACAGGACAGTGCGCCTGTGGGACATGGCGGACAGCTGGAGG ACCACGGAGACGCTGGCCCTGACCTCCGACGCTCTGGCCGTGACCTTTCGCCCCGACGGC GCAGAGCTGGCTGTGGCCACCCTGAACTCGCAGATCACCTTCTGGGATCCCGAGAACGCC GTGCAGACGGGCTCCATCGAGGGCAGGCACGACCTCAAGTCGGGCAGGAAAGAGCTGGAC AAGATCACTGCCAAGCACTCGGCCAAGGGAAAGGCCTTCACCGCGCTGTGCTACTCGGCA GACGGCCAGAGCGTCCTGGCAGGAGGGAGGTCCAAGTTCGTGTGCATCTACCACGTCAGG GAGCAGATTCTCAGGAAGAGGTTCGAGATCTCCGGCAACCTCTCCCTGGACGCCATGGAG GAATTTTTGAACCGAAGGAAAATGACAGAGTTTGGCAACCTGGCGCTCATCGACCAAGAC GCGGCGGATGAGGCTGGGGTCGCCATCCCGCTGCCGGGGGTGAAGAAGGGTGACATGAGC TCTCGCCACTTCAAACCCGAGATCAGGGTGACTTCGCTCCGCTTCTCTCCCACCGGGCGC TGCTGGGCGGCCACCACCACCGAGGGGCTCCTCATCTACTCCCTCAACGCCCGGATGCTC TTTGACCCGTTTGAGCTGGACACCAGTGTCACCCCCGCACGCGTCCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGGGACCGTGCGCGCCTTTGACCTTCACAGGTACCGGAACTTCCGCACCTTCACGTCC CCGCGCCCCACCCAGTTCTCCTGCGTGGCCGTGGACACCAGCGGGGAGGTGGTTGCTGCG GGCGCCCAGGACTCCTTCGAGATCTTCATCTGGTCCATGCAGACGGGCAGGCTCCTTGAC GTGCTCTCCGGCCACGAGGGGCCCATCAGTGGTCTTTGCTTTAACCCCACGAAGTCGGTG CTGGCCAGCGCCTCCTGGGACAGGACAGTGCGCCTGTGGGACATGGCGGACAGCTGGAGG ACCACGGAGACGCTGGCCCTGACCTCCGACGCTCTGGCCGTGACCTTTCGCCCCGACGGC GCAGAGCTGGCTGTGGCCACCCTGAACTCGCAGATCACCTTCTGGGATCCCGAGAACGCC GTGCAGACGGGCTCCATCGAGGGCAGGCACGACCTCAAGTCGGGCAGGAAAGAGCTGGAC AAGATCACTGCCAAGCACTCGGCCAAGGGAAAGGCCTTCACCGCGCTGTGCTACTCGGCA GACGGCCAGAGCGTCCTGGCAGGAGGGAGGTCCAAGTTCGTGTGCATCTACCACGTCAGG GAGCAGATTCTCAGGAAGAGGTTCGAGATCTCCGGCAACCTCTCCCTGGACGCCATGGAG GAATTTTTGAACCGAAGGAAAATGACAGAGTTTGGCAACCTGGCGCTCATCGACCAAGAC GCGGCGGATGAGGCTGGGGTCGCCATCCCGCTGCCGGGGGTGAAGAAGGGTGACATGAGC TCTCGCCACTTCAAACCCGAGATCAGGGTGACTTCGCTCCGCTTCTCTCCCACCGGGCGC TGCTGGGCGGCCACCACCACCGAGGGGCTCCTCATCTACTCCCTCAACGCCCGGATGCTC TTTGACCCGTTTGAGCTGGACACCAGTGTCACCCCCGCACGCGTCCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 28-117, - strand, RNAz p=0.524949 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 28-117, - strand, RNAz p=0.524949 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 28-182, gnl|bosTau2|chr1 (91471072-91471226) | |
| 28-182, gnl|canFam2|chr31 (40341447-40341628) | |
| 28-182, gnl|danRer3|chr1 (32859082-32858912) | |
| 28-182, gnl|dasNov1|scaffold_104361 (4463-4276) | |
| 28-182, gnl|echTel1|scaffold_311417 (225915-226102) | |
| 28-182, gnl|fr1|chrUn (128208838-128209004) | |
| 28-182, gnl|galGal2|chr1 (103990212-103990379) | |
| 28-182, gnl|hg17|chr21 (44364924-44365101) | |
| 28-182, gnl|Hg17|chr21 (44364935-44365089) | |
| 28-182, gnl|mm7|chr10 (77832938-77832756) | |
| 28-182, gnl|Mm7|chr10 (77832924-77832768) | |
| 28-182, gnl|monDom2|scaffold_29 (16397080-16397249) | |
| 28-182, gnl|oryCun1|scaffold_147388 (4001-3817) | |
| 28-182, gnl|panTro1|chr22 (44528958-44529135) | |
| 28-182, gnl|rheMac2|chr3 (2595064-2594887) | |
| 28-182, gnl|rn3|chr20 (10843160-10843342) | |
| 28-182, gnl|tetNig1|chr3 (101874-102031) | |
| 331-513, gnl|bosTau2|chr1 (91472234-91472416) | |
| 331-513, gnl|canFam2|chr31 (40342397-40342604) | |
| 331-513, gnl|danRer3|chr1 (32849495-32849286) | |
| 331-513, gnl|dasNov1|scaffold_104361 (3258-3060) | |
| 331-513, gnl|echTel1|scaffold_311417 (226606-226806) | |
| 331-513, gnl|fr1|chrUn (128209481-128209687) | |
| 331-513, gnl|galGal2|chr1 (103991748-103991943) | |
| 331-513, gnl|hg17|chr21 (44366467-44366674) | |
| 331-513, gnl|Hg17|chr21 (44366485-44366667) | |
| 331-513, gnl|loxAfr1|scaffold_43991 (5349-5143) | |
| 331-513, gnl|mm7|chr10 (77831760-77831554) | |
| 331-513, gnl|Mm7|chr10 (77831741-77831559) | |
| 331-513, gnl|monDom2|scaffold_29 (16400006-16400213) | |
| 331-513, gnl|oryCun1|scaffold_200542 (12825-12644) | |
| 331-513, gnl|panTro1|chr22 (44530503-44530710) | |
| 331-513, gnl|rheMac2|chr3 (2593529-2593322) | |
| 331-513, gnl|rn3|chr20 (10844338-10844546) | |
| 331-513, gnl|tetNig1|chr3 (102848-103039) | |
| 331-513, gnl|xenTro1|scaffold_819 (45275-45464) | |
| 651-773, gnl|bosTau2|chr1 (91473970-91474092) | |
| 651-773, gnl|canFam2|chr31 (40344115-40344288) | |
| 651-773, gnl|danRer3|chr1 (32836943-32836802) | |
| 651-773, gnl|dasNov1|scaffold_104361 (395-253) | |
| 651-773, gnl|echTel1|scaffold_311417 (229823-229979) | |
| 651-773, gnl|fr1|chrUn (128210381-128210528) | |
| 651-773, gnl|galGal2|chr1 (103993556-103993681) | |
| 651-773, gnl|hg17|chr21 (44370292-44370457) | |
| 651-773, gnl|Hg17|chr21 (44370309-44370432) | |
| 651-773, gnl|mm7|chr10 (77830216-77830066) | |
| 651-773, gnl|Mm7|chr10 (77830201-77830086) | |
| 651-773, gnl|monDom2|scaffold_29 (16404681-16404819) | |
| 651-773, gnl|oryCun1|scaffold_147388 (673-511) | |
| 651-773, gnl|panTro1|chr22 (44534333-44534498) | |
| 651-773, gnl|rheMac2|chr3 (2589795-2589631) | |
| 651-773, gnl|rn3|chr20 (10845884-10846033) | |
| 651-773, gnl|tetNig1|chr3 (103524-103678) | |
| 651-773, gnl|xenTro1|scaffold_819 (45780-45890) | |
| 835-948, gnl|bosTau2|chr1 (91475103-91475216) | |
| 835-948, gnl|canFam2|chr31 (40346343-40346581) | |
| 835-948, gnl|danRer3|chr1 (32836446-32836208) | |
| 835-948, gnl|dasNov1|scaffold_104335 (5652-5415) | |
| 835-948, gnl|echTel1|scaffold_311417 (231095-231331) | |
| 835-948, gnl|fr1|chrUn (128211243-128211473) | |
| 835-948, gnl|galGal2|chr1 (103994483-103994721) | |
| 835-948, gnl|hg17|chr21 (44372227-44372465) | |
| 835-948, gnl|Hg17|chr21 (44372240-44372353) | |
| 835-948, gnl|mm7|chr10 (77828670-77828433) | |
| 835-948, gnl|Mm7|chr10 (77828656-77828543) | |
| 835-948, gnl|monDom2|scaffold_29 (16411690-16411928) | |
| 835-948, gnl|oryCun1|scaffold_200542 (12328-12141) | |
| 835-948, gnl|panTro1|chr22 (44536273-44536511) | |
| 835-948, gnl|rheMac2|chr3 (2587872-2587634) | |
| 835-948, gnl|rn3|chr20 (10847535-10847772) | |
| 835-948, gnl|tetNig1|chr3 (104331-104557) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 28-182, gnl|bosTau2|chr1 (91471072-91471226) | |
| 28-182, gnl|canFam2|chr31 (40341447-40341628) | |
| 28-182, gnl|danRer3|chr1 (32859082-32858912) | |
| 28-182, gnl|dasNov1|scaffold_104361 (4463-4276) | |
| 28-182, gnl|echTel1|scaffold_311417 (225915-226102) | |
| 28-182, gnl|fr1|chrUn (128208838-128209004) | |
| 28-182, gnl|galGal2|chr1 (103990212-103990379) | |
| 28-182, gnl|hg17|chr21 (44364924-44365101) | |
| 28-182, gnl|Hg17|chr21 (44364935-44365089) | |
| 28-182, gnl|mm7|chr10 (77832938-77832756) | |
| 28-182, gnl|Mm7|chr10 (77832924-77832768) | |
| 28-182, gnl|monDom2|scaffold_29 (16397080-16397249) | |
| 28-182, gnl|oryCun1|scaffold_147388 (4001-3817) | |
| 28-182, gnl|panTro1|chr22 (44528958-44529135) | |
| 28-182, gnl|rheMac2|chr3 (2595064-2594887) | |
| 28-182, gnl|rn3|chr20 (10843160-10843342) | |
| 28-182, gnl|tetNig1|chr3 (101874-102031) | |
| 331-513, gnl|bosTau2|chr1 (91472234-91472416) | |
| 331-513, gnl|canFam2|chr31 (40342397-40342604) | |
| 331-513, gnl|danRer3|chr1 (32849495-32849286) | |
| 331-513, gnl|dasNov1|scaffold_104361 (3258-3060) | |
| 331-513, gnl|echTel1|scaffold_311417 (226606-226806) | |
| 331-513, gnl|fr1|chrUn (128209481-128209687) | |
| 331-513, gnl|galGal2|chr1 (103991748-103991943) | |
| 331-513, gnl|hg17|chr21 (44366467-44366674) | |
| 331-513, gnl|Hg17|chr21 (44366485-44366667) | |
| 331-513, gnl|loxAfr1|scaffold_43991 (5349-5143) | |
| 331-513, gnl|mm7|chr10 (77831760-77831554) | |
| 331-513, gnl|Mm7|chr10 (77831741-77831559) | |
| 331-513, gnl|monDom2|scaffold_29 (16400006-16400213) | |
| 331-513, gnl|oryCun1|scaffold_200542 (12825-12644) | |
| 331-513, gnl|panTro1|chr22 (44530503-44530710) | |
| 331-513, gnl|rheMac2|chr3 (2593529-2593322) | |
| 331-513, gnl|rn3|chr20 (10844338-10844546) | |
| 331-513, gnl|tetNig1|chr3 (102848-103039) | |
| 331-513, gnl|xenTro1|scaffold_819 (45275-45464) | |
| 651-773, gnl|bosTau2|chr1 (91473970-91474092) | |
| 651-773, gnl|canFam2|chr31 (40344115-40344288) | |
| 651-773, gnl|danRer3|chr1 (32836943-32836802) | |
| 651-773, gnl|dasNov1|scaffold_104361 (395-253) | |
| 651-773, gnl|echTel1|scaffold_311417 (229823-229979) | |
| 651-773, gnl|fr1|chrUn (128210381-128210528) | |
| 651-773, gnl|galGal2|chr1 (103993556-103993681) | |
| 651-773, gnl|hg17|chr21 (44370292-44370457) | |
| 651-773, gnl|Hg17|chr21 (44370309-44370432) | |
| 651-773, gnl|mm7|chr10 (77830216-77830066) | |
| 651-773, gnl|Mm7|chr10 (77830201-77830086) | |
| 651-773, gnl|monDom2|scaffold_29 (16404681-16404819) | |
| 651-773, gnl|oryCun1|scaffold_147388 (673-511) | |
| 651-773, gnl|panTro1|chr22 (44534333-44534498) | |
| 651-773, gnl|rheMac2|chr3 (2589795-2589631) | |
| 651-773, gnl|rn3|chr20 (10845884-10846033) | |
| 651-773, gnl|tetNig1|chr3 (103524-103678) | |
| 651-773, gnl|xenTro1|scaffold_819 (45780-45890) | |
| 835-948, gnl|bosTau2|chr1 (91475103-91475216) | |
| 835-948, gnl|canFam2|chr31 (40346343-40346581) | |
| 835-948, gnl|danRer3|chr1 (32836446-32836208) | |
| 835-948, gnl|dasNov1|scaffold_104335 (5652-5415) | |
| 835-948, gnl|echTel1|scaffold_311417 (231095-231331) | |
| 835-948, gnl|fr1|chrUn (128211243-128211473) | |
| 835-948, gnl|galGal2|chr1 (103994483-103994721) | |
| 835-948, gnl|hg17|chr21 (44372227-44372465) | |
| 835-948, gnl|Hg17|chr21 (44372240-44372353) | |
| 835-948, gnl|mm7|chr10 (77828670-77828433) | |
| 835-948, gnl|Mm7|chr10 (77828656-77828543) | |
| 835-948, gnl|monDom2|scaffold_29 (16411690-16411928) | |
| 835-948, gnl|oryCun1|scaffold_200542 (12328-12141) | |
| 835-948, gnl|panTro1|chr22 (44536273-44536511) | |
| 835-948, gnl|rheMac2|chr3 (2587872-2587634) | |
| 835-948, gnl|rn3|chr20 (10847535-10847772) | |
| 835-948, gnl|tetNig1|chr3 (104331-104557) |