Non-Coding RNA Search

Ss1.1-Pig2-56N21.5

Sequence:


               
               CACTACCTACCACTCTCTCTCATACCCTACCCTTCTCCCAGCCTCGACTCAGGTCTGGGC
TCCAGCTGCCATCAGCCTTACTGCTGCTGTTGCTGTTGTCTGTCCTTGGCCCAGGGGCTG
GGTCTCCAGGATGAGTGTCAGTACCTCCTTCAACCGCAGCTGATTGTCCGGCGTTTGCTG
GATGTTGCCGTGCTGGTGCCTGGGCGACCCTCAGAGCAAACCCTCTCCCCCCACAATCGC
TCAGCCCTGTACAAGGTCTTTGTGCCCAGCTTCACTTACAGGGTTTCAGCACAGCTGGTG
TGTGTGGGGGGCCGAGGGGCACCCGCTTGCCCCCTGACACTGCGCCTACGTCCCAAGGCC
CCACCCCTGCACAACTCAAGCTCTGTGGCCTGCGGAGGTGCCTCAGTATGCCAGCTGGAG
CTGGCTCTGCCCCCCTGGGGGCACTGGGTCTACGTGCGCGTGGAGACACCATCCCGGGGC
CCGGGCAGGACCATCCGCTTCCAGCTGTGTGTGCGGTTGCAAGAGTGCCCACAGCCCAGC
CTGTCCCGTGCCTTGGTCCCTGGAGCTGCCATGAACATGCCCCAGTCGCTGGGCAACCAG
CCGCTGCCCCCAGAGCCGCCATCCCTCGGGGCCCCTGCCGAGGGGCCTGGGGCCACATCC
CCACCCGAGCACTGCTGGCCAGTGCGCCCGACGCTGCGCAATGAGCTGGACACCTTCTCC
GTCCATTTCTACATCTTCTTTGGCCCCAGTGTGGCCCTTCCCCCTGAGCGCCCAGCCGTG
TTTGCCCTGAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTACCTACCACTCTCTCTCATACCCTACCCTTCTCCCAGCCTCGACTCAGGTCTGGGC
TCCAGCTGCCATCAGCCTTACTGCTGCTGTTGCTGTTGTCTGTCCTTGGCCCAGGGGCTG
GGTCTCCAGGATGAGTGTCAGTACCTCCTTCAACCGCAGCTGATTGTCCGGCGTTTGCTG
GATGTTGCCGTGCTGGTGCCTGGGCGACCCTCAGAGCAAACCCTCTCCCCCCACAATCGC
TCAGCCCTGTACAAGGTCTTTGTGCCCAGCTTCACTTACAGGGTTTCAGCACAGCTGGTG
TGTGTGGGGGGCCGAGGGGCACCCGCTTGCCCCCTGACACTGCGCCTACGTCCCAAGGCC
CCACCCCTGCACAACTCAAGCTCTGTGGCCTGCGGAGGTGCCTCAGTATGCCAGCTGGAG
CTGGCTCTGCCCCCCTGGGGGCACTGGGTCTACGTGCGCGTGGAGACACCATCCCGGGGC
CCGGGCAGGACCATCCGCTTCCAGCTGTGTGTGCGGTTGCAAGAGTGCCCACAGCCCAGC
CTGTCCCGTGCCTTGGTCCCTGGAGCTGCCATGAACATGCCCCAGTCGCTGGGCAACCAG
CCGCTGCCCCCAGAGCCGCCATCCCTCGGGGCCCCTGCCGAGGGGCCTGGGGCCACATCC
CCACCCGAGCACTGCTGGCCAGTGCGCCCGACGCTGCGCAATGAGCTGGACACCTTCTCC
GTCCATTTCTACATCTTCTTTGGCCCCAGTGTGGCCCTTCCCCCTGAGCGCCCAGCCGTG
TTTGCCCTGAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               404-523, + strand, RNAz p=0.983901

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               404-523, + strand, RNAz p=0.983901

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_016446, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016446, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               247-523, gnl|bosTau2|chr8 (28604948-28605224)
               

               
               247-523, gnl|Hg17|chr9 (35831515-35831791)
               

               
               247-523, gnl|Mm7|chr4 (43694852-43695128)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-523, gnl|bosTau2|chr8 (28604948-28605224)
               

               
               247-523, gnl|Hg17|chr9 (35831515-35831791)
               

               
               247-523, gnl|Mm7|chr4 (43694852-43695128)

	247-523, gnl\|bosTau2\|chr8 (28604948-28605224)
	247-523, gnl\|Hg17\|chr9 (35831515-35831791)
	247-523, gnl\|Mm7\|chr4 (43694852-43695128)