Ss1.1-Pig2-57B18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACCGCGCTCGCTGCCGTCGCGCTGAAGAAAGGATGCTCTAGGATGCTGTGCAGGTGGG CGGCTGGCCTGCGCCATGCGGCAATGCAGGTGTAAGTAGCATGGTCCATGCGGGAGTGAT GAGCGGTTCTGGAAACCTGATGGATTTCCTCGACGAGCCATTCCCTGACGTGGGGACCTA TGAGGACTTCCACACCATCGACTGGCTGCGGGAAAAAGTCCAGGGACACTGACCGCCACA GAAAGATAACCAGCAAGAGCAAGGAGTCCATATGGGAGTTCATCAAGAGCCTGCTGGACG CCTGGTCAGGATGGGTGGTGATGCTGCTCATCGGCCTGCTGGCGGGCACCTTGGCCGGGG TCATCGATCTCGCCGTCGACTGGATGACCGACCTGAAGGAAGGCGTCTGCCTCTCTGCCT TCTGGTACAGCCACGAGCAGTGCTGCTGGACTTCCAACGAGACCACCTTTGAGGACAGGG ACAAGTGTCCCCTGTGGCAGAAGTGGTCGGAGCTGCTGGTGAATCAGGCGGAGGGAGCCA GTGCTTACATTCTGAATTACCTAATGTACATCCTGTGGGCGCTGCTGTTCGCGTTTCTGG CCGTCTCCCTGGTACGAGTGTGCGCGCCTTACGCCTGCGGTTCTGGTATACCAGAGATCA AAACCATCTTGAGCGGCTTCATCATCAGGGGCTACTTGGGGAAGTGGACCCTGCTGATCA AGACTGTCACCCTGGTGCTGGTGGTGTCCTCGGGCCTGAGCCTCGGCAAAGAGGGGCCGC TGGTGCACGTGGCCTGCTGCTGTGGCAACTTCTTCAGCAGCCTTTTCTCCAAGTACAGCA AGAATGAGGGCAAGAGGCGCGAGGTGCTGTCGGCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACCGCGCTCGCTGCCGTCGCGCTGAAGAAAGGATGCTCTAGGATGCTGTGCAGGTGGG CGGCTGGCCTGCGCCATGCGGCAATGCAGGTGTAAGTAGCATGGTCCATGCGGGAGTGAT GAGCGGTTCTGGAAACCTGATGGATTTCCTCGACGAGCCATTCCCTGACGTGGGGACCTA TGAGGACTTCCACACCATCGACTGGCTGCGGGAAAAAGTCCAGGGACACTGACCGCCACA GAAAGATAACCAGCAAGAGCAAGGAGTCCATATGGGAGTTCATCAAGAGCCTGCTGGACG CCTGGTCAGGATGGGTGGTGATGCTGCTCATCGGCCTGCTGGCGGGCACCTTGGCCGGGG TCATCGATCTCGCCGTCGACTGGATGACCGACCTGAAGGAAGGCGTCTGCCTCTCTGCCT TCTGGTACAGCCACGAGCAGTGCTGCTGGACTTCCAACGAGACCACCTTTGAGGACAGGG ACAAGTGTCCCCTGTGGCAGAAGTGGTCGGAGCTGCTGGTGAATCAGGCGGAGGGAGCCA GTGCTTACATTCTGAATTACCTAATGTACATCCTGTGGGCGCTGCTGTTCGCGTTTCTGG CCGTCTCCCTGGTACGAGTGTGCGCGCCTTACGCCTGCGGTTCTGGTATACCAGAGATCA AAACCATCTTGAGCGGCTTCATCATCAGGGGCTACTTGGGGAAGTGGACCCTGCTGATCA AGACTGTCACCCTGGTGCTGGTGGTGTCCTCGGGCCTGAGCCTCGGCAAAGAGGGGCCGC TGGTGCACGTGGCCTGCTGCTGTGGCAACTTCTTCAGCAGCCTTTTCTCCAAGTACAGCA AGAATGAGGGCAAGAGGCGCGAGGTGCTGTCGGCTG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 415-534, + strand, RNAz p=0.962891 | |
| 748-866, + strand, RNAz p=0.778898 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 415-534, + strand, RNAz p=0.962891 | |
| 748-866, + strand, RNAz p=0.778898 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 87-245, gnl|bosTau2|chrX (41240966-41240809) | |
| 87-245, gnl|Hg17|chrX (9962795-9962952) | |
| 87-245, gnl|Mm7|chr7_random (244-401) | |
| 336-534, gnl|bosTau2|chrX (41233082-41232884) | |
| 336-534, gnl|Hg17|chrX (9972677-9972875) | |
| 336-534, gnl|Mm7|chr7_random (1934-2130) | |
| 655-866, gnl|bosTau2|chrX (41224499-41224288) | |
| 655-866, gnl|canFam2|chrX (6853177-6853391) | |
| 655-866, gnl|danRer3|chr5 (37217034-37217248) | |
| 655-866, gnl|dasNov1|scaffold_1004 (46755-46969) | |
| 655-866, gnl|echTel1|scaffold_307890 (55592-55378) | |
| 655-866, gnl|fr1|chrUn (32734100-32733886) | |
| 655-866, gnl|galGal2|chr1 (117783311-117783097) | |
| 655-866, gnl|hg17|chrX (9984132-9984346) | |
| 655-866, gnl|Hg17|chrX (9984132-9984343) | |
| 655-866, gnl|loxAfr1|scaffold_26671 (30041-29827) | |
| 655-866, gnl|mm7|chr7_random (3002-3216) | |
| 655-866, gnl|Mm7|chr7_random (3002-3213) | |
| 655-866, gnl|monDom2|scaffold_25 (32262878-32262664) | |
| 655-866, gnl|oryCun1|scaffold_202001 (23001-23207) | |
| 655-866, gnl|panTro1|chrX (10293207-10293421) | |
| 655-866, gnl|rheMac2|chrX (7837600-7837814) | |
| 655-866, gnl|rn3|chrX (44450538-44450752) | |
| 655-866, gnl|tetNig1|chr3 (1440936-1440722) | |
| 655-866, gnl|xenTro1|scaffold_16 (2926054-2925840) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 87-245, gnl|bosTau2|chrX (41240966-41240809) | |
| 87-245, gnl|Hg17|chrX (9962795-9962952) | |
| 87-245, gnl|Mm7|chr7_random (244-401) | |
| 336-534, gnl|bosTau2|chrX (41233082-41232884) | |
| 336-534, gnl|Hg17|chrX (9972677-9972875) | |
| 336-534, gnl|Mm7|chr7_random (1934-2130) | |
| 655-866, gnl|bosTau2|chrX (41224499-41224288) | |
| 655-866, gnl|canFam2|chrX (6853177-6853391) | |
| 655-866, gnl|danRer3|chr5 (37217034-37217248) | |
| 655-866, gnl|dasNov1|scaffold_1004 (46755-46969) | |
| 655-866, gnl|echTel1|scaffold_307890 (55592-55378) | |
| 655-866, gnl|fr1|chrUn (32734100-32733886) | |
| 655-866, gnl|galGal2|chr1 (117783311-117783097) | |
| 655-866, gnl|hg17|chrX (9984132-9984346) | |
| 655-866, gnl|Hg17|chrX (9984132-9984343) | |
| 655-866, gnl|loxAfr1|scaffold_26671 (30041-29827) | |
| 655-866, gnl|mm7|chr7_random (3002-3216) | |
| 655-866, gnl|Mm7|chr7_random (3002-3213) | |
| 655-866, gnl|monDom2|scaffold_25 (32262878-32262664) | |
| 655-866, gnl|oryCun1|scaffold_202001 (23001-23207) | |
| 655-866, gnl|panTro1|chrX (10293207-10293421) | |
| 655-866, gnl|rheMac2|chrX (7837600-7837814) | |
| 655-866, gnl|rn3|chrX (44450538-44450752) | |
| 655-866, gnl|tetNig1|chr3 (1440936-1440722) | |
| 655-866, gnl|xenTro1|scaffold_16 (2926054-2925840) |