Non-Coding RNA Search

Ss1.1-Pig2-57D07.5

Sequence:


               
               CGAGAAGCCCTCCAGCAGGCCTGGGCCGGGGCCGCCGCCTGCATGCAGGCCCAGGTTCAG
GAGCACACCGAACGTGTAGAGGAAGAGGTTCTGAAGCGCCAGGGGCAGCCGCTGCCGCTT
GAGGAGCAGCTCTGTGTACACGGAGGACAAGCCGGAGATGAGGCAGTACAGGAGGAGGAG
CAGCAGGCCCGGTGCGGTGACGTGCAGGGGCACGGGGCCCGAGGCAGCCGTGGAAGGGGA
CTCAGGAAGGGGGCTCCCAGGGTCCCGGAGGCCGCCAGCCGCATAGCAGGCTCCCGCTGC
CATCAGCAGCAGCAGGGCCAAGCCCTGGCGCGCAGAGAGGCGGCGGCGGAGGCAAAGGCA
GTAGAAGAGCGCTGTGCTGCCGATCTTGAGGTTGCTCAGCACCTGGTAGGTGCTGGGATC
CATGTAGTGCTGGAGGTGGATCACCAAGTTGTTGTTGGCGCCGTAGAGCAGGGCTGACAG
TGCGAAGGGGGCCGCCTGGCGCCAGGGTGGGGTCCTCGGGGGCCAGGCCTGCCAGCCCAC
CAGGAGGGAGAGGGCGCACAGGAGCAGCTTGGTCAGTTCAGTCAGCAGCACGGCCGAGGA
GGGCCGGAAGGGCACGCGGCCATCCACATGGCACAGTGCCAGCAACGGGGCATGGGCACC
GTAGGTGGCAGTGGACAGGAGGAGCATCAGGGTCCAGCGAGCCTGCCCAGGGCCGCCCAG
GCCTGGCAAACCCCCGTCCTCTACACTCATGCCCAATGAGGCCCTTGGGGGCTGAGGAGC
TAGCAAGGGGACGCTGGGGATTGTGACATGGTTGGGGAGAGTCGAAGTTTCAGAGCTGGC
TCCCAGGAAAGAGGAGCTGTGGCACATGGCCAGAGAGAATACTGAGAATCGGAGTCAGCT
GCGGCCTCCACAGCGAAGGCTAGAAGAGGAAAGGGCCACTGGCCCTAGAAGCCACCGCTT
GGGGCCAGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGAAGCCCTCCAGCAGGCCTGGGCCGGGGCCGCCGCCTGCATGCAGGCCCAGGTTCAG
GAGCACACCGAACGTGTAGAGGAAGAGGTTCTGAAGCGCCAGGGGCAGCCGCTGCCGCTT
GAGGAGCAGCTCTGTGTACACGGAGGACAAGCCGGAGATGAGGCAGTACAGGAGGAGGAG
CAGCAGGCCCGGTGCGGTGACGTGCAGGGGCACGGGGCCCGAGGCAGCCGTGGAAGGGGA
CTCAGGAAGGGGGCTCCCAGGGTCCCGGAGGCCGCCAGCCGCATAGCAGGCTCCCGCTGC
CATCAGCAGCAGCAGGGCCAAGCCCTGGCGCGCAGAGAGGCGGCGGCGGAGGCAAAGGCA
GTAGAAGAGCGCTGTGCTGCCGATCTTGAGGTTGCTCAGCACCTGGTAGGTGCTGGGATC
CATGTAGTGCTGGAGGTGGATCACCAAGTTGTTGTTGGCGCCGTAGAGCAGGGCTGACAG
TGCGAAGGGGGCCGCCTGGCGCCAGGGTGGGGTCCTCGGGGGCCAGGCCTGCCAGCCCAC
CAGGAGGGAGAGGGCGCACAGGAGCAGCTTGGTCAGTTCAGTCAGCAGCACGGCCGAGGA
GGGCCGGAAGGGCACGCGGCCATCCACATGGCACAGTGCCAGCAACGGGGCATGGGCACC
GTAGGTGGCAGTGGACAGGAGGAGCATCAGGGTCCAGCGAGCCTGCCCAGGGCCGCCCAG
GCCTGGCAAACCCCCGTCCTCTACACTCATGCCCAATGAGGCCCTTGGGGGCTGAGGAGC
TAGCAAGGGGACGCTGGGGATTGTGACATGGTTGGGGAGAGTCGAAGTTTCAGAGCTGGC
TCCCAGGAAAGAGGAGCTGTGGCACATGGCCAGAGAGAATACTGAGAATCGGAGTCAGCT
GCGGCCTCCACAGCGAAGGCTAGAAGAGGAAAGGGCCACTGGCCCTAGAAGCCACCGCTT
GGGGCCAGTCCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8MIA3_PIG

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8MIA3_PIG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               200-719, - strand, RNAz p=0.899623
               

               
               822-934, - strand, RNAz p=0.845178

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-719, - strand, RNAz p=0.899623
               

               
               822-934, - strand, RNAz p=0.845178

Homologous human UTR: 2 entry(ies)

More info

Homologous human UTR: 2 entry(ies)

Help | Less info


               
               3' of AF445025, -
               

               
               3' of AF445025, -

Homologous human UTR: 2 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AF445025, -
               

               
               3' of AF445025, -

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-934, gnl|bosTau2|chr7 (30562754-30563687)
               

               
               1-934, gnl|Hg17|chr5 (139927688-139926767)
               

               
               1-934, gnl|Mm7|chr18 (37059069-37058155)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-934, gnl|bosTau2|chr7 (30562754-30563687)
               

               
               1-934, gnl|Hg17|chr5 (139927688-139926767)
               

               
               1-934, gnl|Mm7|chr18 (37059069-37058155)

	200-719, - strand, RNAz p=0.899623
	822-934, - strand, RNAz p=0.845178

	1-934, gnl\|bosTau2\|chr7 (30562754-30563687)
	1-934, gnl\|Hg17\|chr5 (139927688-139926767)
	1-934, gnl\|Mm7\|chr18 (37059069-37058155)