Non-Coding RNA Search

Ss1.1-Pig2-59H22.5

Sequence:


               
               CCGCGGACAGGCAGCAGCAGCGGGCCATGGTGCGCCCTGCGCCCGACGGGCGACGCGGTC
TTGAGCGCCCCTTTGCTCCGCTGGCCGCTTGCCCCGCGGATCCCGGACGGCACCCGGGTT
CGGAGAGTAAAAAAACGGGGGCCGAGTCGAATATCAGAGTAAAAGACCAGTACCCCTGGG
CTCAATCCCTCGTAAAGGGTCGGCTGCGGGGCGGGGAACGAATCCGGAAACGCTGAGAAC
GCTCAATTGCCCACACTCGCTCAGGGGAGGAGGAGGGCAAAGCGAGGGACAGCGTTATCG
GCCCCCGGACGACTAGCGCGCCCCTTGGCAGTGGAGCTCGATGCGTAGTCTGGGAGCTCA
GAGCGTTCGTGAGAAGTTGGGGCGTCGGTGCTGCGGTGAGAGAGAGATCTCCCGGGCCTC
GGGGTGTCCCAGGCACCCGGCAGGCACGGCGTGGGTTGGAGGCAAAGGTCCTGGCTGTCC
CTTTCCTGCAAAGTTCTGAAAACCTCAGCAAAGACCGCAGCGTAAGACCAAGTGGAAAGG
TTCCTGCTGGCGCTTGTAGCTCTAATTGGCAGAAGGAGGCGGAGCGTCTCGAACCCGCAG
CTGCAAGAGGAGTAAGACGAGAGTCCACAGCGAGACACAGCGCCTCAGGGACGAAGTTTA
GCTCTCCCGGCAGACTTGAAATTGAGGCTGTCACACCAGCCTCAGCACCACGCACATCGC
GGTTTCCTAGACGGCCTCCTACCGCTTCCCGGAGGCCGCAGCCCGGCTCGGCCTCGGCCA
AAGCCCTTGGTCAGCTCGGCAGCCTGCCTGCGAGGTGCGGCTGGACCTGAGCCCGCTGGC
GCTGCGCTCAGAAAAGCAGCTGCCCCTGGGTTCAGTTAAATAAGAGAAGTGTGAGAGCGG
AGGATAAATATCCTCCTGGCCCCTTCCTACCAACCGGACGAGGAGGGCTGCAGATAGAGG
AAATGAAAAACGGCTGGCTAGTTTGCATTTTATGATGGGAAAGACTCCTGCATTGTAAAG
AGAGGGCTGACCAGTTTCCAGAAGCACCTGGCATGTTCCCTGCACCAGCCCTGAAGCCTG
ACAGCTGCCTTACAAAGGGTGTGTGTCCACATAGCCACATTGGCCTGGCTCCTGGAACCT
CCGGATCTCATTTGAGCTGCATTAATAAAAACTTAAAAATTAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGACAGGCAGCAGCAGCGGGCCATGGTGCGCCCTGCGCCCGACGGGCGACGCGGTC
TTGAGCGCCCCTTTGCTCCGCTGGCCGCTTGCCCCGCGGATCCCGGACGGCACCCGGGTT
CGGAGAGTAAAAAAACGGGGGCCGAGTCGAATATCAGAGTAAAAGACCAGTACCCCTGGG
CTCAATCCCTCGTAAAGGGTCGGCTGCGGGGCGGGGAACGAATCCGGAAACGCTGAGAAC
GCTCAATTGCCCACACTCGCTCAGGGGAGGAGGAGGGCAAAGCGAGGGACAGCGTTATCG
GCCCCCGGACGACTAGCGCGCCCCTTGGCAGTGGAGCTCGATGCGTAGTCTGGGAGCTCA
GAGCGTTCGTGAGAAGTTGGGGCGTCGGTGCTGCGGTGAGAGAGAGATCTCCCGGGCCTC
GGGGTGTCCCAGGCACCCGGCAGGCACGGCGTGGGTTGGAGGCAAAGGTCCTGGCTGTCC
CTTTCCTGCAAAGTTCTGAAAACCTCAGCAAAGACCGCAGCGTAAGACCAAGTGGAAAGG
TTCCTGCTGGCGCTTGTAGCTCTAATTGGCAGAAGGAGGCGGAGCGTCTCGAACCCGCAG
CTGCAAGAGGAGTAAGACGAGAGTCCACAGCGAGACACAGCGCCTCAGGGACGAAGTTTA
GCTCTCCCGGCAGACTTGAAATTGAGGCTGTCACACCAGCCTCAGCACCACGCACATCGC
GGTTTCCTAGACGGCCTCCTACCGCTTCCCGGAGGCCGCAGCCCGGCTCGGCCTCGGCCA
AAGCCCTTGGTCAGCTCGGCAGCCTGCCTGCGAGGTGCGGCTGGACCTGAGCCCGCTGGC
GCTGCGCTCAGAAAAGCAGCTGCCCCTGGGTTCAGTTAAATAAGAGAAGTGTGAGAGCGG
AGGATAAATATCCTCCTGGCCCCTTCCTACCAACCGGACGAGGAGGGCTGCAGATAGAGG
AAATGAAAAACGGCTGGCTAGTTTGCATTTTATGATGGGAAAGACTCCTGCATTGTAAAG
AGAGGGCTGACCAGTTTCCAGAAGCACCTGGCATGTTCCCTGCACCAGCCCTGAAGCCTG
ACAGCTGCCTTACAAAGGGTGTGTGTCCACATAGCCACATTGGCCTGGCTCCTGGAACCT
CCGGATCTCATTTGAGCTGCATTAATAAAAACTTAAAAATTAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               810-928, + strand, RNAz p=0.581572

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               810-928, + strand, RNAz p=0.581572

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-602, gnl|bosTau2|chr16 (15130526-15129954)
               

               
               3-602, gnl|Hg17|chr9 (77492238-77492859)
               

               
               3-602, gnl|Mm7|chr19 (16137647-16137065)
               


               
               639-1090, gnl|bosTau2|chr16 (15129670-15129268)
               

               
               639-1090, gnl|Hg17|chr9 (77493125-77493582)
               

               
               639-1090, gnl|Mm7|chr19 (16136789-16136325)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-602, gnl|bosTau2|chr16 (15130526-15129954)
               

               
               3-602, gnl|Hg17|chr9 (77492238-77492859)
               

               
               3-602, gnl|Mm7|chr19 (16137647-16137065)
               


               
               639-1090, gnl|bosTau2|chr16 (15129670-15129268)
               

               
               639-1090, gnl|Hg17|chr9 (77493125-77493582)
               

               
               639-1090, gnl|Mm7|chr19 (16136789-16136325)

	3-602, gnl\|bosTau2\|chr16 (15130526-15129954)
	3-602, gnl\|Hg17\|chr9 (77492238-77492859)
	3-602, gnl\|Mm7\|chr19 (16137647-16137065)

	639-1090, gnl\|bosTau2\|chr16 (15129670-15129268)
	639-1090, gnl\|Hg17\|chr9 (77493125-77493582)
	639-1090, gnl\|Mm7\|chr19 (16136789-16136325)