Ss1.1-Pig2-5M18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCCTCGAGGAAGANAGAAGCCTGAGACATCCACCTATGAAGACTGTACGACAATCCT GACTAGTAATTGTGGATNGGTGTGGCTGCCAGACTTAATTCTGCCCAGCATCTGAAATGA AGCTCTCCTATTGATGGTTTTGATTGGTCTAGAGCCAGGAGAGCTGGATTTAGTTGACTT CAAGATAAAAAGAAACAGTCTTGGTTATCATCATAAACATTTGAACCAGTGATGGTGAAA TGAGATGAGGCTCCGAAATGGAACTGTAGCCACTGTTTTAGCATTTATCACTTCGTTCCT TACTTTATCTTGGTATACCACGTGGCAAAATGGGAAGAAAACTGATTGCTTATCAACGAG AGAATTTCTTGCTTTGAAAGAGCGTCTCCGAATAGCTGAACATAGGATCTCCCAGCGCTC TTCTGAACTAAATGCTATTGTGCAGCAGTTCAAACGCGTAGGAGCAGAAACCAATGGAAG TAAGGCTGCATCGAATAAATTTTCAGATGATACCCTAAAGCTATTAAAGGAGTTAACAAG CAAAAAACCTCTTCAAGTGCCAAGTATTTATTATCATTTGCCTCATTTTTTTCTGTATTG TCTTTGTAAAATCTTTTTATATAGTTGCTATCATTACTTTGTTTCAGTTTCGATAGTAAT GGGAATTCCCACAGTGAAGAGAGAAGTTAAATCTTACCTCATGGAAACTCTTCATTCTGT TATTGATAATCTGTATCCTGAAGAGAAGTTGGACTGTGTTATAGTAGTCTTCATAGGAGA GGTAATTATTTAACTGTTACTATTTTCTACCACTTGTCATTGCTAACAGTTGAAACTATA TTTTGAATATATTATTAGAAACCTTTTTTATAAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCCTCGAGGAAGANAGAAGCCTGAGACATCCACCTATGAAGACTGTACGACAATCCT GACTAGTAATTGTGGATNGGTGTGGCTGCCAGACTTAATTCTGCCCAGCATCTGAAATGA AGCTCTCCTATTGATGGTTTTGATTGGTCTAGAGCCAGGAGAGCTGGATTTAGTTGACTT CAAGATAAAAAGAAACAGTCTTGGTTATCATCATAAACATTTGAACCAGTGATGGTGAAA TGAGATGAGGCTCCGAAATGGAACTGTAGCCACTGTTTTAGCATTTATCACTTCGTTCCT TACTTTATCTTGGTATACCACGTGGCAAAATGGGAAGAAAACTGATTGCTTATCAACGAG AGAATTTCTTGCTTTGAAAGAGCGTCTCCGAATAGCTGAACATAGGATCTCCCAGCGCTC TTCTGAACTAAATGCTATTGTGCAGCAGTTCAAACGCGTAGGAGCAGAAACCAATGGAAG TAAGGCTGCATCGAATAAATTTTCAGATGATACCCTAAAGCTATTAAAGGAGTTAACAAG CAAAAAACCTCTTCAAGTGCCAAGTATTTATTATCATTTGCCTCATTTTTTTCTGTATTG TCTTTGTAAAATCTTTTTATATAGTTGCTATCATTACTTTGTTTCAGTTTCGATAGTAAT GGGAATTCCCACAGTGAAGAGAGAAGTTAAATCTTACCTCATGGAAACTCTTCATTCTGT TATTGATAATCTGTATCCTGAAGAGAAGTTGGACTGTGTTATAGTAGTCTTCATAGGAGA GGTAATTATTTAACTGTTACTATTTTCTACCACTTGTCATTGCTAACAGTTGAAACTATA TTTTGAATATATTATTAGAAACCTTTTTTATAAAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 627-746, - strand, RNAz p=0.639961 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 627-746, - strand, RNAz p=0.639961 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 30-336, gnl|bosTau2|chr11 (3851421-3851728) | |
| 30-336, gnl|Hg17|chr2 (98801530-98801222) | |
| 30-336, gnl|Mm7|chr1 (37777769-37777422) | |
| 338-506, gnl|bosTau2|chr11 (3900233-3900399) | |
| 338-506, gnl|canFam2|chr10 (47102389-47102193) | |
| 338-506, gnl|danRer3|chr9 (8794822-8795024) | |
| 338-506, gnl|dasNov1|scaffold_12997 (2643-2840) | |
| 338-506, gnl|echTel1|scaffold_157728 (829-1021) | |
| 338-506, gnl|fr1|chrUn (92402229-92402429) | |
| 338-506, gnl|galGal2|chr1 (125392603-125392797) | |
| 338-506, gnl|hg17|chr2 (98753280-98753477) | |
| 338-506, gnl|Hg17|chr2 (98753451-98753285) | |
| 338-506, gnl|loxAfr1|scaffold_56941 (5949-5751) | |
| 338-506, gnl|mm7|chr1 (37739951-37740146) | |
| 338-506, gnl|Mm7|chr1 (37740120-37739954) | |
| 338-506, gnl|monDom2|scaffold_11 (14557083-14557282) | |
| 338-506, gnl|oryCun1|scaffold_186085 (9985-10181) | |
| 338-506, gnl|panTro1|chr12 (101471197-101471394) | |
| 338-506, gnl|rheMac2|chr13 (98582867-98583064) | |
| 338-506, gnl|rn3|chr9 (36440183-36440379) | |
| 338-506, gnl|tetNig1|chr2 (8926199-8925999) | |
| 338-506, gnl|xenTro1|scaffold_798 (399258-399063) | |
| 588-876, gnl|bosTau2|chr11 (3912419-3912709) | |
| 588-876, gnl|Hg17|chr2 (98738216-98737924) | |
| 588-876, gnl|Mm7|chr1 (37731827-37731557) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 30-336, gnl|bosTau2|chr11 (3851421-3851728) | |
| 30-336, gnl|Hg17|chr2 (98801530-98801222) | |
| 30-336, gnl|Mm7|chr1 (37777769-37777422) | |
| 338-506, gnl|bosTau2|chr11 (3900233-3900399) | |
| 338-506, gnl|canFam2|chr10 (47102389-47102193) | |
| 338-506, gnl|danRer3|chr9 (8794822-8795024) | |
| 338-506, gnl|dasNov1|scaffold_12997 (2643-2840) | |
| 338-506, gnl|echTel1|scaffold_157728 (829-1021) | |
| 338-506, gnl|fr1|chrUn (92402229-92402429) | |
| 338-506, gnl|galGal2|chr1 (125392603-125392797) | |
| 338-506, gnl|hg17|chr2 (98753280-98753477) | |
| 338-506, gnl|Hg17|chr2 (98753451-98753285) | |
| 338-506, gnl|loxAfr1|scaffold_56941 (5949-5751) | |
| 338-506, gnl|mm7|chr1 (37739951-37740146) | |
| 338-506, gnl|Mm7|chr1 (37740120-37739954) | |
| 338-506, gnl|monDom2|scaffold_11 (14557083-14557282) | |
| 338-506, gnl|oryCun1|scaffold_186085 (9985-10181) | |
| 338-506, gnl|panTro1|chr12 (101471197-101471394) | |
| 338-506, gnl|rheMac2|chr13 (98582867-98583064) | |
| 338-506, gnl|rn3|chr9 (36440183-36440379) | |
| 338-506, gnl|tetNig1|chr2 (8926199-8925999) | |
| 338-506, gnl|xenTro1|scaffold_798 (399258-399063) | |
| 588-876, gnl|bosTau2|chr11 (3912419-3912709) | |
| 588-876, gnl|Hg17|chr2 (98738216-98737924) | |
| 588-876, gnl|Mm7|chr1 (37731827-37731557) |