Non-Coding RNA Search

Ss1.1-Pig2-64L06.5

Sequence:


               
               GTGGAGCCCAGCTTTACTGTGACCTATGGAAAGCTAGCTAAAGTACTTTCTCCAAAGCAA
CAGCAAAATAAAACAAAGCAAAGTGTCCTGTCACCTGGAAAAAGAGAAGCAGATGTCAGA
ACCACTAGATCAAAAACAAATTAGCCCGGACTCTAGTCAAGAAGATGACAAGGCCTGCGT
GCTAAAGGTGGTCTGGAATGGACTTGAGGAATTGAAGAATGCCGTTAAATACACCAAGAA
TGTAGAAGCTCTTCATCTTGGGAAAGTCTGGATTCCAGATGACCTGAGAAAGAGACTAAA
TATAGAAATGCATGCAGTAGTCAGAATAACTCCAGTGGAAATTACCCCTAAAATTCCAAG
ATCTCTAACATTACAACCTAGAGAAAACTTACCTGAAGACGTAAGTGAAGAAGACATAAA
AGCTGTGTTCTCTTCATGGTTACAACAGTCCACTACTACCACACTTCCTTTGATAATATC
AGAGGAAGAATATATTAAGCTGGAAATTAAAGATGGATTGAAGGAGTTTTCTCTGAATAC
AGCTCATTCTTGGGAAAAGGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGAGCCCAGCTTTACTGTGACCTATGGAAAGCTAGCTAAAGTACTTTCTCCAAAGCAA
CAGCAAAATAAAACAAAGCAAAGTGTCCTGTCACCTGGAAAAAGAGAAGCAGATGTCAGA
ACCACTAGATCAAAAACAAATTAGCCCGGACTCTAGTCAAGAAGATGACAAGGCCTGCGT
GCTAAAGGTGGTCTGGAATGGACTTGAGGAATTGAAGAATGCCGTTAAATACACCAAGAA
TGTAGAAGCTCTTCATCTTGGGAAAGTCTGGATTCCAGATGACCTGAGAAAGAGACTAAA
TATAGAAATGCATGCAGTAGTCAGAATAACTCCAGTGGAAATTACCCCTAAAATTCCAAG
ATCTCTAACATTACAACCTAGAGAAAACTTACCTGAAGACGTAAGTGAAGAAGACATAAA
AGCTGTGTTCTCTTCATGGTTACAACAGTCCACTACTACCACACTTCCTTTGATAATATC
AGAGGAAGAATATATTAAGCTGGAAATTAAAGATGGATTGAAGGAGTTTTCTCTGAATAC
AGCTCATTCTTGGGAAAAGGAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.701129

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.701129

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               7-149, - strand, RNAmicro p=0.994068

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               7-149, - strand, RNAmicro p=0.994068

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-274, gnl|bosTau2|chr4 (4173682-4173410)
               

               
               1-274, gnl|canFam2|chr14 (21054286-21054949)
               

               
               1-274, gnl|dasNov1|scaffold_43974 (7914-7208)
               

               
               1-274, gnl|echTel1|scaffold_55439 (5592-4915)
               

               
               1-274, gnl|galGal2|chr2 (21979015-21979723)
               

               
               1-274, gnl|hg17|chr7 (91791227-91791935)
               

               
               1-274, gnl|Hg17|chr7 (91791510-91791238)
               

               
               1-274, gnl|loxAfr1|scaffold_22885 (15502-16254)
               

               
               1-274, gnl|mm7|chr5 (3612431-3611727)
               

               
               1-274, gnl|Mm7|chr5 (3612147-3612419)
               

               
               1-274, gnl|monDom2|scaffold_7 (60488897-60489617)
               

               
               1-274, gnl|oryCun1|scaffold_130670 (7800-7098)
               

               
               1-274, gnl|panTro1|chr6 (93347795-93348503)
               

               
               1-274, gnl|rheMac2|chr3 (124749344-124748636)
               

               
               1-274, gnl|rn3|chr4 (27281642-27282347)
               

               
               1-274, gnl|xenTro1|scaffold_182 (61835-62534)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chr4 (4173682-4173410)
               

               
               1-274, gnl|canFam2|chr14 (21054286-21054949)
               

               
               1-274, gnl|dasNov1|scaffold_43974 (7914-7208)
               

               
               1-274, gnl|echTel1|scaffold_55439 (5592-4915)
               

               
               1-274, gnl|galGal2|chr2 (21979015-21979723)
               

               
               1-274, gnl|hg17|chr7 (91791227-91791935)
               

               
               1-274, gnl|Hg17|chr7 (91791510-91791238)
               

               
               1-274, gnl|loxAfr1|scaffold_22885 (15502-16254)
               

               
               1-274, gnl|mm7|chr5 (3612431-3611727)
               

               
               1-274, gnl|Mm7|chr5 (3612147-3612419)
               

               
               1-274, gnl|monDom2|scaffold_7 (60488897-60489617)
               

               
               1-274, gnl|oryCun1|scaffold_130670 (7800-7098)
               

               
               1-274, gnl|panTro1|chr6 (93347795-93348503)
               

               
               1-274, gnl|rheMac2|chr3 (124749344-124748636)
               

               
               1-274, gnl|rn3|chr4 (27281642-27282347)
               

               
               1-274, gnl|xenTro1|scaffold_182 (61835-62534)

	1-274, gnl\|bosTau2\|chr4 (4173682-4173410)
	1-274, gnl\|canFam2\|chr14 (21054286-21054949)
	1-274, gnl\|dasNov1\|scaffold_43974 (7914-7208)
	1-274, gnl\|echTel1\|scaffold_55439 (5592-4915)
	1-274, gnl\|galGal2\|chr2 (21979015-21979723)
	1-274, gnl\|hg17\|chr7 (91791227-91791935)
	1-274, gnl\|Hg17\|chr7 (91791510-91791238)
	1-274, gnl\|loxAfr1\|scaffold_22885 (15502-16254)
	1-274, gnl\|mm7\|chr5 (3612431-3611727)
	1-274, gnl\|Mm7\|chr5 (3612147-3612419)
	1-274, gnl\|monDom2\|scaffold_7 (60488897-60489617)
	1-274, gnl\|oryCun1\|scaffold_130670 (7800-7098)
	1-274, gnl\|panTro1\|chr6 (93347795-93348503)
	1-274, gnl\|rheMac2\|chr3 (124749344-124748636)
	1-274, gnl\|rn3\|chr4 (27281642-27282347)
	1-274, gnl\|xenTro1\|scaffold_182 (61835-62534)