Non-Coding RNA Search

Ss1.1-Pig2-65E19.5

Sequence:


               
               TCACGTAAAGACTGCAGATAAGGATAGTAGTCGGTGTGCATTTTGGAACTACCTACCTGA
CACCATGAATGGAAGCTGGTCCTCAGAGGGCTGTGAGCTGATGTACTCCAATGAGACCCA
CACCTCATGCCGCTGTAATCACCTGACACATTTTGCAATTGTGATGTCTTCTGGTTCTTC
CGTTGGTATTAAAGATTATAATACTCTTACAAGGATCACTCAACTAGGAATAATTATTTC
ACTGATTTGCCTTGCCATATGCATTTTTACCTTCTGGTTCTTCAGTGAAATTCAAAGCAC
CAGGACAACAATTCACAAAAATCTCTGCTGTAGCCTATTCCTTGCAGAATTTGTTTTTCT
TGTGGGGATCAATACAAATACTAATAAGCTCTTTTGTTCAATCATCGCAGGGCTACTGCA
TTACTTCTTCTTAGCTGCCTTTGCATGGATGTGCATTGAAGGCATCCACCTCTACCTCAT
TGTGGTAGGAGTCATCTACAACAAGGGATTTTTGCACAAGAACTTTTATATCTTTGGCTA
TCTCAGCCCAGCTGTGGTAGTTGGATTTTCAGCATCATTAGGTTACAGATATTATGGCAC
CACCAAAGTATGTTGGCTTAGCACAGAAAACAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACGTAAAGACTGCAGATAAGGATAGTAGTCGGTGTGCATTTTGGAACTACCTACCTGA
CACCATGAATGGAAGCTGGTCCTCAGAGGGCTGTGAGCTGATGTACTCCAATGAGACCCA
CACCTCATGCCGCTGTAATCACCTGACACATTTTGCAATTGTGATGTCTTCTGGTTCTTC
CGTTGGTATTAAAGATTATAATACTCTTACAAGGATCACTCAACTAGGAATAATTATTTC
ACTGATTTGCCTTGCCATATGCATTTTTACCTTCTGGTTCTTCAGTGAAATTCAAAGCAC
CAGGACAACAATTCACAAAAATCTCTGCTGTAGCCTATTCCTTGCAGAATTTGTTTTTCT
TGTGGGGATCAATACAAATACTAATAAGCTCTTTTGTTCAATCATCGCAGGGCTACTGCA
TTACTTCTTCTTAGCTGCCTTTGCATGGATGTGCATTGAAGGCATCCACCTCTACCTCAT
TGTGGTAGGAGTCATCTACAACAAGGGATTTTTGCACAAGAACTTTTATATCTTTGGCTA
TCTCAGCCCAGCTGTGGTAGTTGGATTTTCAGCATCATTAGGTTACAGATATTATGGCAC
CACCAAAGTATGTTGGCTTAGCACAGAAAACAACTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61857196|ref|XP_583934.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61857196|ref|XP_583934.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               426-545, + strand, RNAz p=0.722739

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               426-545, + strand, RNAz p=0.722739

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-185, gnl|bosTau2|chr3 (43844982-43845158)
               

               
               9-185, gnl|Hg17|chr1 (79099494-79099318)
               

               
               9-185, gnl|Mm7|chr3 (151409415-151409594)
               


               
               387-609, gnl|bosTau2|chr3 (43849321-43849543)
               

               
               387-609, gnl|Hg17|chr1 (79095758-79095536)
               

               
               387-609, gnl|Mm7|chr3 (151417609-151417831)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-185, gnl|bosTau2|chr3 (43844982-43845158)
               

               
               9-185, gnl|Hg17|chr1 (79099494-79099318)
               

               
               9-185, gnl|Mm7|chr3 (151409415-151409594)
               


               
               387-609, gnl|bosTau2|chr3 (43849321-43849543)
               

               
               387-609, gnl|Hg17|chr1 (79095758-79095536)
               

               
               387-609, gnl|Mm7|chr3 (151417609-151417831)

	9-185, gnl\|bosTau2\|chr3 (43844982-43845158)
	9-185, gnl\|Hg17\|chr1 (79099494-79099318)
	9-185, gnl\|Mm7\|chr3 (151409415-151409594)

	387-609, gnl\|bosTau2\|chr3 (43849321-43849543)
	387-609, gnl\|Hg17\|chr1 (79095758-79095536)
	387-609, gnl\|Mm7\|chr3 (151417609-151417831)