Non-Coding RNA Search

Ss1.1-Pig2-66B12.5

Sequence:


               
               CATGAGCCATACCATCTGGGCTCCCCCACTTCCAGTGTGCTCTTAGCTCTGCCTGCCTGG
CGTGGGGTCCTGGAGACTTTCTTGGAGCTCATCCAGCAACCATCATGCAGGGTGGTGCTG
GGAACCGCCCTCTTCCTCGGAGGTGGAGGCCTCATGCTGTGGATGCAGAGGAAGAGGAGA
AGGAAGGCAGCTTCTGAGGGTGCACAAGATGAGCAAGAGCCACCAGAAAGCCACGAAGAA
AAGAACGAGAACTGGATCAAATCGCACTTTAGCCGTCTTTCCGAAGAGAAGCTGCCCGCC
GGAGGAACGGCCGGGACCAGCAGCACGGCCGGGGGCAACTGCGGCATCACGGGGGCTCCC
CAGCCTGATGGTGGCATCGGAGAGGCCAGCACGACAATCCCCGGGGAGACCTTCACCACC
AGGCAGGGAGAAGAGGGCGCGGCTCTTCACCGGGAGTCCTTCACCAGCAAGCAGAGGATG
TCTGGGACCTTGGTGACCAAAGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGAGCCATACCATCTGGGCTCCCCCACTTCCAGTGTGCTCTTAGCTCTGCCTGCCTGG
CGTGGGGTCCTGGAGACTTTCTTGGAGCTCATCCAGCAACCATCATGCAGGGTGGTGCTG
GGAACCGCCCTCTTCCTCGGAGGTGGAGGCCTCATGCTGTGGATGCAGAGGAAGAGGAGA
AGGAAGGCAGCTTCTGAGGGTGCACAAGATGAGCAAGAGCCACCAGAAAGCCACGAAGAA
AAGAACGAGAACTGGATCAAATCGCACTTTAGCCGTCTTTCCGAAGAGAAGCTGCCCGCC
GGAGGAACGGCCGGGACCAGCAGCACGGCCGGGGGCAACTGCGGCATCACGGGGGCTCCC
CAGCCTGATGGTGGCATCGGAGAGGCCAGCACGACAATCCCCGGGGAGACCTTCACCACC
AGGCAGGGAGAAGAGGGCGCGGCTCTTCACCGGGAGTCCTTCACCAGCAAGCAGAGGATG
TCTGGGACCTTGGTGACCAAAGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-199, + strand, RNAz p=0.959163

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, + strand, RNAz p=0.959163

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001009997, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001009997, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-503, gnl|bosTau2|chr26 (10517987-10517491)
               

               
               1-503, gnl|Hg17|chr10 (99339498-99339967)
               

               
               1-503, gnl|Mm7|chr19 (41946120-41946575)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-503, gnl|bosTau2|chr26 (10517987-10517491)
               

               
               1-503, gnl|Hg17|chr10 (99339498-99339967)
               

               
               1-503, gnl|Mm7|chr19 (41946120-41946575)

	1-503, gnl\|bosTau2\|chr26 (10517987-10517491)
	1-503, gnl\|Hg17\|chr10 (99339498-99339967)
	1-503, gnl\|Mm7\|chr19 (41946120-41946575)