Non-Coding RNA Search

Ss1.1-Pig2-66D01.5

Sequence:


               
               TTGTTTGGTCTCCAGCTGCAGCAAGCTCTTGGGCCGTGGACTACCACTCCCGTGAGGTAG
TGCGTAATGCCACTCCGCGGCGTCTTCGAACGCGCCGCGGCAGCCATGTTGGACGTGGCC
AGCACAGGGGCCGGCACCAGGGGGCTAGCGAAGCAGCTGTCACGATGCTGGGGTCCCTGG
TGTTAAGGAAAACAGCGCCTGCGCCGCGGCTCCTCCTCCAGCTGCTTAGGTCCCCATCGC
TCCGGAGTACCACTGGCCGGAGTGTGACCACCGGGGGCCGCGGGGAGCCTCATTGGTTGA
GGGCGGCCGTCGGAGGGCGGCATGGAACGTCGCCCGCCTTACTCGCCGAAGGAGGGGCAG
CCACCGGGGGGCGCCAGAGAGGAAGTACCGAGACCCCGTGCCTCGCAGCCTCCACGTGGG
GACGCCTTCCTAGCCCCGAAGACCCACTGCCTGGGCAGGACAGCTGGAACCAGGTCCTCA
ACAGGGCCGGATTANGCGTGTGGGCCCTGGCCTCGGCGCTGGTGGCTCACTGTTACAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGTTTGGTCTCCAGCTGCAGCAAGCTCTTGGGCCGTGGACTACCACTCCCGTGAGGTAG
TGCGTAATGCCACTCCGCGGCGTCTTCGAACGCGCCGCGGCAGCCATGTTGGACGTGGCC
AGCACAGGGGCCGGCACCAGGGGGCTAGCGAAGCAGCTGTCACGATGCTGGGGTCCCTGG
TGTTAAGGAAAACAGCGCCTGCGCCGCGGCTCCTCCTCCAGCTGCTTAGGTCCCCATCGC
TCCGGAGTACCACTGGCCGGAGTGTGACCACCGGGGGCCGCGGGGAGCCTCATTGGTTGA
GGGCGGCCGTCGGAGGGCGGCATGGAACGTCGCCCGCCTTACTCGCCGAAGGAGGGGCAG
CCACCGGGGGGCGCCAGAGAGGAAGTACCGAGACCCCGTGCCTCGCAGCCTCCACGTGGG
GACGCCTTCCTAGCCCCGAAGACCCACTGCCTGGGCAGGACAGCTGGAACCAGGTCCTCA
ACAGGGCCGGATTANGCGTGTGGGCCCTGGCCTCGGCGCTGGTGGCTCACTGTTACAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-115, - strand, RNAz p=0.977482

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-115, - strand, RNAz p=0.977482

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-540, gnl|bosTau2|chr15 (29659765-29660313)
               

               
               1-540, gnl|canFam2|chr21 (28715766-28714958)
               

               
               1-540, gnl|echTel1|scaffold_311431 (41261-40449)
               

               
               1-540, gnl|hg17|chr11 (71822631-71823438)
               

               
               1-540, gnl|Hg17|chr11 (71823334-71822782)
               

               
               1-540, gnl|loxAfr1|scaffold_45285 (4-790)
               

               
               1-540, gnl|mm7|chr7 (97710589-97709792)
               

               
               1-540, gnl|Mm7|chr7 (97709892-97710441)
               

               
               1-540, gnl|monDom2|scaffold_74 (5992697-5991834)
               

               
               1-540, gnl|oryCun1|scaffold_210090 (120847-121648)
               

               
               1-540, gnl|panTro1|chr9 (73095650-73096457)
               

               
               1-540, gnl|rheMac2|chr14 (70513675-70514482)
               

               
               1-540, gnl|rn3|chr1_random (2327927-2328733)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr15 (29659765-29660313)
               

               
               1-540, gnl|canFam2|chr21 (28715766-28714958)
               

               
               1-540, gnl|echTel1|scaffold_311431 (41261-40449)
               

               
               1-540, gnl|hg17|chr11 (71822631-71823438)
               

               
               1-540, gnl|Hg17|chr11 (71823334-71822782)
               

               
               1-540, gnl|loxAfr1|scaffold_45285 (4-790)
               

               
               1-540, gnl|mm7|chr7 (97710589-97709792)
               

               
               1-540, gnl|Mm7|chr7 (97709892-97710441)
               

               
               1-540, gnl|monDom2|scaffold_74 (5992697-5991834)
               

               
               1-540, gnl|oryCun1|scaffold_210090 (120847-121648)
               

               
               1-540, gnl|panTro1|chr9 (73095650-73096457)
               

               
               1-540, gnl|rheMac2|chr14 (70513675-70514482)
               

               
               1-540, gnl|rn3|chr1_random (2327927-2328733)

	1-540, gnl\|bosTau2\|chr15 (29659765-29660313)
	1-540, gnl\|canFam2\|chr21 (28715766-28714958)
	1-540, gnl\|echTel1\|scaffold_311431 (41261-40449)
	1-540, gnl\|hg17\|chr11 (71822631-71823438)
	1-540, gnl\|Hg17\|chr11 (71823334-71822782)
	1-540, gnl\|loxAfr1\|scaffold_45285 (4-790)
	1-540, gnl\|mm7\|chr7 (97710589-97709792)
	1-540, gnl\|Mm7\|chr7 (97709892-97710441)
	1-540, gnl\|monDom2\|scaffold_74 (5992697-5991834)
	1-540, gnl\|oryCun1\|scaffold_210090 (120847-121648)
	1-540, gnl\|panTro1\|chr9 (73095650-73096457)
	1-540, gnl\|rheMac2\|chr14 (70513675-70514482)
	1-540, gnl\|rn3\|chr1_random (2327927-2328733)