Non-Coding RNA Search

Ss1.1-Pig2-68B09.5

Sequence:


               
               AAGGGCAGGGCCCGCGGCCCGTCCTGGGGGGCTCCTTTTTGGGTCCCCCACTGCCAGGAG
CATCCATCCAGCTGCCCAGCTGCCTGGTGCTGAATTCGCTGCAGCAGGAGCTGCAGAGGG
ACAGGGAGGCCATGGCACTGGCCAGCTCCGTGCAGGGCTGCCTCATCCGCAAGTGCCTCT
TCCAGGATGGGAAGGGAGGCGTCTTCGTTTGCTCCTATGGCCGAGCCAAGATGGAAGGGA
ACATCTTCCGGAACCTGACTTACGCGGTGCGGTGCATTCACAATAGCAAGTGTGACCAGA
TCCACCATGGCCTTCGCTCTGGCATTGGTGTTCTCGGCAATGGGAAAGGCATCATCCGGA
ATAACCAGATCTTTTCAAATAAGGAGGCTGGCATTTATATCCTGTACCACGGAAATCCAA
TCGTGAGCCGGAACCACATTTTCAGGGGCCATGCGGCCGGCATAGCTGTGAACGAGAACG
GCAGAGGCCTCATCACAGAAAATGTCATCCGAGAGAATCAGTGGGGAGGTGTGGACATCC
GCCGAGGAGGGGTCCCCGCCCTCAGGAGCAACCTCATCTGCTTCGGCTATTCTGATGGCG
TGGTTGTGGGGGATGAAGGCAAAGGCCTGATAGAAGGAAACACCATCTGCGCGAATAAGG
GCTGTGGCGTGTGGATGATGTCGTCCAGCCTGCCCCACGTCACCAGCAACCACGTCAGCT
ACAATGGCCTGTACGGACTGGCAGTGTTCAGCCAGAAGGATGGCTCCGGGGAGTTCCCTG
GAGGCCACGGGGCCCAGGAGAACTTCAGCGAGGACGGCGATGCCATCCTCTGGGAGCCGG
AGCCGGAGAAGGATGACGACCCGCTGCGGCGGCCCGTCACGGTAGCTCTGATTGAGTCCA
ACAGTGTGAATCACAATGGAGCCTCAGGACTCTATGTCCAGAGCAGTGAGGCGCTGCACG
TCATCACCAATGTGATCCATGCCAACGGGGACAGAGGCATCACTGTGGCCCAGAGCAGCC
AGCTCACCCGCATGGCCAACAACAGCATCTCCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGCAGGGCCCGCGGCCCGTCCTGGGGGGCTCCTTTTTGGGTCCCCCACTGCCAGGAG
CATCCATCCAGCTGCCCAGCTGCCTGGTGCTGAATTCGCTGCAGCAGGAGCTGCAGAGGG
ACAGGGAGGCCATGGCACTGGCCAGCTCCGTGCAGGGCTGCCTCATCCGCAAGTGCCTCT
TCCAGGATGGGAAGGGAGGCGTCTTCGTTTGCTCCTATGGCCGAGCCAAGATGGAAGGGA
ACATCTTCCGGAACCTGACTTACGCGGTGCGGTGCATTCACAATAGCAAGTGTGACCAGA
TCCACCATGGCCTTCGCTCTGGCATTGGTGTTCTCGGCAATGGGAAAGGCATCATCCGGA
ATAACCAGATCTTTTCAAATAAGGAGGCTGGCATTTATATCCTGTACCACGGAAATCCAA
TCGTGAGCCGGAACCACATTTTCAGGGGCCATGCGGCCGGCATAGCTGTGAACGAGAACG
GCAGAGGCCTCATCACAGAAAATGTCATCCGAGAGAATCAGTGGGGAGGTGTGGACATCC
GCCGAGGAGGGGTCCCCGCCCTCAGGAGCAACCTCATCTGCTTCGGCTATTCTGATGGCG
TGGTTGTGGGGGATGAAGGCAAAGGCCTGATAGAAGGAAACACCATCTGCGCGAATAAGG
GCTGTGGCGTGTGGATGATGTCGTCCAGCCTGCCCCACGTCACCAGCAACCACGTCAGCT
ACAATGGCCTGTACGGACTGGCAGTGTTCAGCCAGAAGGATGGCTCCGGGGAGTTCCCTG
GAGGCCACGGGGCCCAGGAGAACTTCAGCGAGGACGGCGATGCCATCCTCTGGGAGCCGG
AGCCGGAGAAGGATGACGACCCGCTGCGGCGGCCCGTCACGGTAGCTCTGATTGAGTCCA
ACAGTGTGAATCACAATGGAGCCTCAGGACTCTATGTCCAGAGCAGTGAGGCGCTGCACG
TCATCACCAATGTGATCCATGCCAACGGGGACAGAGGCATCACTGTGGCCCAGAGCAGCC
AGCTCACCCGCATGGCCAACAACAGCATCTCCTGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|50927156|gb|AAH79571.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50927156|gb|AAH79571.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-159, + strand, RNAz p=0.995455
               

               
               75-286, + strand, RNAz p=0.99061
               

               
               730-849, + strand, RNAz p=0.986779

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, + strand, RNAz p=0.995455
               

               
               75-286, + strand, RNAz p=0.99061
               

               
               730-849, + strand, RNAz p=0.986779

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-290, gnl|bosTau2|chr8 (29927694-29927983)
               

               
               1-290, gnl|canFam2|chr11 (56882668-56883113)
               

               
               1-290, gnl|danRer3|chr1 (15510316-15509881)
               

               
               1-290, gnl|dasNov1|scaffold_43491 (9388-8945)
               

               
               1-290, gnl|echTel1|scaffold_262661 (2354-1926)
               

               
               1-290, gnl|fr1|chrUn (17098647-17099039)
               

               
               1-290, gnl|hg17|chr9 (37527088-37527525)
               

               
               1-290, gnl|Hg17|chr9 (37527396-37527107)
               

               
               1-290, gnl|mm7|chr4 (45072115-45072553)
               

               
               1-290, gnl|Mm7|chr4 (45072432-45072143)
               

               
               1-290, gnl|monDom2|scaffold_19 (10301920-10302345)
               

               
               1-290, gnl|oryCun1|scaffold_176314 (113034-113455)
               

               
               1-290, gnl|panTro1|chr11 (38255953-38256390)
               

               
               1-290, gnl|rheMac2|chr15 (39890560-39890123)
               

               
               1-290, gnl|rn3|chr5 (61622527-61622965)
               

               
               1-290, gnl|tetNig1|chr18 (144150-144542)
               

               
               1-290, gnl|xenTro1|scaffold_495 (57902-57464)
               


               
               651-921, gnl|bosTau2|chr8 (29939362-29939632)
               

               
               651-921, gnl|Hg17|chr9 (37511836-37511566)
               

               
               651-921, gnl|Mm7|chr4 (45057718-45057454)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr8 (29927694-29927983)
               

               
               1-290, gnl|canFam2|chr11 (56882668-56883113)
               

               
               1-290, gnl|danRer3|chr1 (15510316-15509881)
               

               
               1-290, gnl|dasNov1|scaffold_43491 (9388-8945)
               

               
               1-290, gnl|echTel1|scaffold_262661 (2354-1926)
               

               
               1-290, gnl|fr1|chrUn (17098647-17099039)
               

               
               1-290, gnl|hg17|chr9 (37527088-37527525)
               

               
               1-290, gnl|Hg17|chr9 (37527396-37527107)
               

               
               1-290, gnl|mm7|chr4 (45072115-45072553)
               

               
               1-290, gnl|Mm7|chr4 (45072432-45072143)
               

               
               1-290, gnl|monDom2|scaffold_19 (10301920-10302345)
               

               
               1-290, gnl|oryCun1|scaffold_176314 (113034-113455)
               

               
               1-290, gnl|panTro1|chr11 (38255953-38256390)
               

               
               1-290, gnl|rheMac2|chr15 (39890560-39890123)
               

               
               1-290, gnl|rn3|chr5 (61622527-61622965)
               

               
               1-290, gnl|tetNig1|chr18 (144150-144542)
               

               
               1-290, gnl|xenTro1|scaffold_495 (57902-57464)
               


               
               651-921, gnl|bosTau2|chr8 (29939362-29939632)
               

               
               651-921, gnl|Hg17|chr9 (37511836-37511566)
               

               
               651-921, gnl|Mm7|chr4 (45057718-45057454)

	1-159, + strand, RNAz p=0.995455
	75-286, + strand, RNAz p=0.99061
	730-849, + strand, RNAz p=0.986779

	1-290, gnl\|bosTau2\|chr8 (29927694-29927983)
	1-290, gnl\|canFam2\|chr11 (56882668-56883113)
	1-290, gnl\|danRer3\|chr1 (15510316-15509881)
	1-290, gnl\|dasNov1\|scaffold_43491 (9388-8945)
	1-290, gnl\|echTel1\|scaffold_262661 (2354-1926)
	1-290, gnl\|fr1\|chrUn (17098647-17099039)
	1-290, gnl\|hg17\|chr9 (37527088-37527525)
	1-290, gnl\|Hg17\|chr9 (37527396-37527107)
	1-290, gnl\|mm7\|chr4 (45072115-45072553)
	1-290, gnl\|Mm7\|chr4 (45072432-45072143)
	1-290, gnl\|monDom2\|scaffold_19 (10301920-10302345)
	1-290, gnl\|oryCun1\|scaffold_176314 (113034-113455)
	1-290, gnl\|panTro1\|chr11 (38255953-38256390)
	1-290, gnl\|rheMac2\|chr15 (39890560-39890123)
	1-290, gnl\|rn3\|chr5 (61622527-61622965)
	1-290, gnl\|tetNig1\|chr18 (144150-144542)
	1-290, gnl\|xenTro1\|scaffold_495 (57902-57464)

	651-921, gnl\|bosTau2\|chr8 (29939362-29939632)
	651-921, gnl\|Hg17\|chr9 (37511836-37511566)
	651-921, gnl\|Mm7\|chr4 (45057718-45057454)