Non-Coding RNA Search

Ss1.1-Pig2-68E18.5

Sequence:


               
               CTCAGGAAGTTAGGGCAGGTGGTTTGGTGAAAGAACAGCTGAAGGCAATACTCCCCCTGA
TGGGAGAAAGTTAAAGAAGGCAGTGACCTTGAGAAGAGGAGCAGTCAGGCCAAAGTGCCA
CCCCCGCTTCTGGACCTGTTGTTTTGAAGACTGAAAAGACAAACCACAGTATTTCTCTTG
ACCCACCCAGCAGATGTGAAAAGATTCTGCGGCTGGACACTGGAAAGCACCTTGCTTCCT
AAGCCAATCAGTCTGATTTCTGAAATGTCTGATATTTCCCAGTGGTGGAGTAGTGCAGGA
TCTGGGGTTTCAGGCAGCTCTGTGGGCTGTGGTCATCCTCTGAGTTGGGGTGCAGGTGGG
GTTACCACAAGGGCTCACTGTTCACTGAGCTTTATGAAGACCATGGTTTAGAATTGTTGC
TCAGCCAACCAACCAACAGGGGGGCATGAAATTCCCTAACATGGTTTAGAGACAAACAGA
AACAGGGTTTGTCTGACTGAGCACCCTCCCTCTTCAAGATGCACCGCGACCCACCTGCCT
GCAGCCTGGCAGAGGTGGGAGTTTGCAAGGTGGGTGCACTAATGTTTCCTCTTCTCCCCC
CAGAGCCTGCCAAAGCCACCTCGGACCTGACTGCCTGGTTCAGCCTCTTTGCTGACCTCG
ACCCATTATCAAATCCTGATGCTGTTGGGAAAACCGATAAAGAACACGAATTGCTCAATG
CATGAGTCTACAGCCTCTGGGAGGGAGCCCACAAACTGCTCTGCATCAACACACCAGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGGAAGTTAGGGCAGGTGGTTTGGTGAAAGAACAGCTGAAGGCAATACTCCCCCTGA
TGGGAGAAAGTTAAAGAAGGCAGTGACCTTGAGAAGAGGAGCAGTCAGGCCAAAGTGCCA
CCCCCGCTTCTGGACCTGTTGTTTTGAAGACTGAAAAGACAAACCACAGTATTTCTCTTG
ACCCACCCAGCAGATGTGAAAAGATTCTGCGGCTGGACACTGGAAAGCACCTTGCTTCCT
AAGCCAATCAGTCTGATTTCTGAAATGTCTGATATTTCCCAGTGGTGGAGTAGTGCAGGA
TCTGGGGTTTCAGGCAGCTCTGTGGGCTGTGGTCATCCTCTGAGTTGGGGTGCAGGTGGG
GTTACCACAAGGGCTCACTGTTCACTGAGCTTTATGAAGACCATGGTTTAGAATTGTTGC
TCAGCCAACCAACCAACAGGGGGGCATGAAATTCCCTAACATGGTTTAGAGACAAACAGA
AACAGGGTTTGTCTGACTGAGCACCCTCCCTCTTCAAGATGCACCGCGACCCACCTGCCT
GCAGCCTGGCAGAGGTGGGAGTTTGCAAGGTGGGTGCACTAATGTTTCCTCTTCTCCCCC
CAGAGCCTGCCAAAGCCACCTCGGACCTGACTGCCTGGTTCAGCCTCTTTGCTGACCTCG
ACCCATTATCAAATCCTGATGCTGTTGGGAAAACCGATAAAGAACACGAATTGCTCAATG
CATGAGTCTACAGCCTCTGGGAGGGAGCCCACAAACTGCTCTGCATCAACACACCAGGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|5739568|gb|AAD50515.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5739568|gb|AAD50515.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               586-705, - strand, RNAz p=0.972081

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               586-705, - strand, RNAz p=0.972081

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               146-780, gnl|bosTau2|chr23 (6582447-6583069)
               

               
               146-780, gnl|Hg17|chr7 (7927436-7926739)
               

               
               146-780, gnl|Mm7|chr6 (8589473-8588886)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-780, gnl|bosTau2|chr23 (6582447-6583069)
               

               
               146-780, gnl|Hg17|chr7 (7927436-7926739)
               

               
               146-780, gnl|Mm7|chr6 (8589473-8588886)

	146-780, gnl\|bosTau2\|chr23 (6582447-6583069)
	146-780, gnl\|Hg17\|chr7 (7927436-7926739)
	146-780, gnl\|Mm7\|chr6 (8589473-8588886)