Non-Coding RNA Search

Ss1.1-Pig2-69J24.5

Sequence:


               
               GTGGCAGCAAGGACTGCGGTGGAGTCCACGGAGCGGGATGTGCGATAGTTACTCCAGGTC
GTTGTTGAGGGTCTCGGTGGCGCATATCTGCCAGGCGCTGGGCTGGGACTCGGTGCAACT
GAGCGCCTGCCACCTCCTCACGGACGTGCTGCAGCGGTACCTGCAGCAGTTGGGACGGGG
CGGCGACCGGTACTCTGAGCTGTACGGCCGAACAGACCCAATTTTGGATGATGTTGGTGA
AGCTTTCCAACTTATGGGGGTTAGTCTCCATGAACTCGAGAGTTACATCCACAACATTGA
ACCCGTCACCTTCCCACACCAGATTCCTTCATTTCCTGTTAGCAAGAACAATGTCCTTCA
GTTTCCTCAGCCTGGAAGTCAAGATGCAGAGGAAAGAAAAGAATACATTCCTGACTACCT
GCCACCCATTGTGTCTTCTCAAGAAGAAGAAGAAGAAGAGCAGGTGCCCACCGATGGGGG
CACATCGGCAGAGGCCATGCAGGTTCCCTTGGAAGAAGATGACGAGCTGGAGGAGGAGGA
AATTATTAACGATGAGAACTTCTTGGGTAAGAGACCGCTGGACAGTCCGGAAGATGAAGA
ACTGCCTGCCATGAAGCGGCATCGCATGATAAGCAGCAAAGGAGACACCCTGGACGTGGT
GTTGCAGGAAGCCCGAGAACCGCTCAGATCGATCAACACCCAGAAGATCCCGCCAATGAT
ATATCCCGTCCACGTCCAGGACAGCGCGGACCTCGCGCCTCCGTCACCAGAGCCGCCCAT
GTTAGCTCCGGTGGCAAAATCACAGATGCCAACCGCAAAGCCACTGCACCCAAAGTCGTT
TACCCCCAAAACAAAGACTAAAACTACTTCTCCAGGACAGAAGGATAAATCGCTTAAAAC
GACTCAGTCACCAGCAATGGTCGGAAGTCCTATTCGGTCACCAAAAACTCTATCCAAAGA
AAAGAAGTCTCCTGGACGTTCTAAGAGCCCCAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCAGCAAGGACTGCGGTGGAGTCCACGGAGCGGGATGTGCGATAGTTACTCCAGGTC
GTTGTTGAGGGTCTCGGTGGCGCATATCTGCCAGGCGCTGGGCTGGGACTCGGTGCAACT
GAGCGCCTGCCACCTCCTCACGGACGTGCTGCAGCGGTACCTGCAGCAGTTGGGACGGGG
CGGCGACCGGTACTCTGAGCTGTACGGCCGAACAGACCCAATTTTGGATGATGTTGGTGA
AGCTTTCCAACTTATGGGGGTTAGTCTCCATGAACTCGAGAGTTACATCCACAACATTGA
ACCCGTCACCTTCCCACACCAGATTCCTTCATTTCCTGTTAGCAAGAACAATGTCCTTCA
GTTTCCTCAGCCTGGAAGTCAAGATGCAGAGGAAAGAAAAGAATACATTCCTGACTACCT
GCCACCCATTGTGTCTTCTCAAGAAGAAGAAGAAGAAGAGCAGGTGCCCACCGATGGGGG
CACATCGGCAGAGGCCATGCAGGTTCCCTTGGAAGAAGATGACGAGCTGGAGGAGGAGGA
AATTATTAACGATGAGAACTTCTTGGGTAAGAGACCGCTGGACAGTCCGGAAGATGAAGA
ACTGCCTGCCATGAAGCGGCATCGCATGATAAGCAGCAAAGGAGACACCCTGGACGTGGT
GTTGCAGGAAGCCCGAGAACCGCTCAGATCGATCAACACCCAGAAGATCCCGCCAATGAT
ATATCCCGTCCACGTCCAGGACAGCGCGGACCTCGCGCCTCCGTCACCAGAGCCGCCCAT
GTTAGCTCCGGTGGCAAAATCACAGATGCCAACCGCAAAGCCACTGCACCCAAAGTCGTT
TACCCCCAAAACAAAGACTAAAACTACTTCTCCAGGACAGAAGGATAAATCGCTTAAAAC
GACTCAGTCACCAGCAATGGTCGGAAGTCCTATTCGGTCACCAAAAACTCTATCCAAAGA
AAAGAAGTCTCCTGGACGTTCTAAGAGCCCCAAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49256603|gb|AAH73884.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49256603|gb|AAH73884.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-158, + strand, RNAz p=0.87177

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-158, + strand, RNAz p=0.87177

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-203, gnl|bosTau2|chr13 (8286655-8286453)
               

               
               1-203, gnl|Hg17|chr10 (7900642-7900844)
               

               
               1-203, gnl|Mm7|chr2 (9987596-9987393)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-203, gnl|bosTau2|chr13 (8286655-8286453)
               

               
               1-203, gnl|Hg17|chr10 (7900642-7900844)
               

               
               1-203, gnl|Mm7|chr2 (9987596-9987393)

	1-203, gnl\|bosTau2\|chr13 (8286655-8286453)
	1-203, gnl\|Hg17\|chr10 (7900642-7900844)
	1-203, gnl\|Mm7\|chr2 (9987596-9987393)