Non-Coding RNA Search

Ss1.1-Pig2-6F20.5.5

Sequence:


               
               GTGGGCCTGGGTAGATGGGCTGTCCGTGGTACTGGAAGGGGCAGCAGCTCCAGGCACTGA
CACGGGCCCCCCAGGGAGACCCCGGGCATCTTGAGTGGCTCCTTCTCAGCGGGCGCCATG
GGGGATGTCTCGGGCCCCAGGGGCTCCAAGCCTTTGCAGTGTTTCTTCCCGTCGTAGGGA
GGTCCCTCCCGGGGGCCCAGTCCCCCCTCCAGCCCCACGGGGTAGCTGTGGGTGGGCTGT
GGCTCTTCCCAGAAGGAGGCGGGCAGCTGTCTTTTCCTCATGGGCACCTGGCCAGGCCTG
GCAGCTTCTGGATCCTGCCCGTGTAGGGTCTGCTCCTTAGGGAGACTCTCCTCCCTGTAG
GGGTTCCCCGACGCCTTCTCCTTGCAGCCCCCACCCCCACTGGGGCTGGAATTGTGGCCG
GTGTCGAGGGGCAGCCTCCCAGGCCGGTCCTCGGGCCCCCTTTTCAGGTGAGGCTCGGCC
CCTCTGCCGGGGAGGCCCCGCGGGAGCCGGGAATACTTCTGGGAGAAGCGTTTGAGCTGC
TTCTGCAGGTACTTGCGGTGGTCCACCGAGCGGCGACAGGGCGCAGACTTGTCCAGGGCC
GCCTTGATGTCACTGGACGCCAGGTTCACAAAGTTCAGCAGCATCTTCACGTCACTGTCG
GATGCCATCACCAGGGGGCCACTGCACGGGGCTTTCCATGAAGAGGGTGAGTTCTGCAGG
CGGCTGGCAGCTCCAGGGAAGGCCACAAAGCTGACCTTGACTGTATCCGCTGGGCCCTTC
TGATGCGTCTCGTCACCTCAACCAGGGCACTGGGCCGGACGCGTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGGCCTGGGTAGATGGGCTGTCCGTGGTACTGGAAGGGGCAGCAGCTCCAGGCACTGA
CACGGGCCCCCCAGGGAGACCCCGGGCATCTTGAGTGGCTCCTTCTCAGCGGGCGCCATG
GGGGATGTCTCGGGCCCCAGGGGCTCCAAGCCTTTGCAGTGTTTCTTCCCGTCGTAGGGA
GGTCCCTCCCGGGGGCCCAGTCCCCCCTCCAGCCCCACGGGGTAGCTGTGGGTGGGCTGT
GGCTCTTCCCAGAAGGAGGCGGGCAGCTGTCTTTTCCTCATGGGCACCTGGCCAGGCCTG
GCAGCTTCTGGATCCTGCCCGTGTAGGGTCTGCTCCTTAGGGAGACTCTCCTCCCTGTAG
GGGTTCCCCGACGCCTTCTCCTTGCAGCCCCCACCCCCACTGGGGCTGGAATTGTGGCCG
GTGTCGAGGGGCAGCCTCCCAGGCCGGTCCTCGGGCCCCCTTTTCAGGTGAGGCTCGGCC
CCTCTGCCGGGGAGGCCCCGCGGGAGCCGGGAATACTTCTGGGAGAAGCGTTTGAGCTGC
TTCTGCAGGTACTTGCGGTGGTCCACCGAGCGGCGACAGGGCGCAGACTTGTCCAGGGCC
GCCTTGATGTCACTGGACGCCAGGTTCACAAAGTTCAGCAGCATCTTCACGTCACTGTCG
GATGCCATCACCAGGGGGCCACTGCACGGGGCTTTCCATGAAGAGGGTGAGTTCTGCAGG
CGGCTGGCAGCTCCAGGGAAGGCCACAAAGCTGACCTTGACTGTATCCGCTGGGCCCTTC
TGATGCGTCTCGTCACCTCAACCAGGGCACTGGGCCGGACGCGTGGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61836327|ref|XP_594106.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61836327|ref|XP_594106.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               122-463, - strand, RNAz p=0.950505

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               122-463, - strand, RNAz p=0.950505

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-757, gnl|bosTau2|chr21 (37581294-37582065)
               

               
               3-757, gnl|Hg17|chr14 (93465064-93464296)
               

               
               3-757, gnl|Mm7|chr12 (100812180-100811433)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-757, gnl|bosTau2|chr21 (37581294-37582065)
               

               
               3-757, gnl|Hg17|chr14 (93465064-93464296)
               

               
               3-757, gnl|Mm7|chr12 (100812180-100811433)

	3-757, gnl\|bosTau2\|chr21 (37581294-37582065)
	3-757, gnl\|Hg17\|chr14 (93465064-93464296)
	3-757, gnl\|Mm7\|chr12 (100812180-100811433)