Non-Coding RNA Search

Ss1.1-Pig2-6H24.5

Sequence:


               
               TTCACGTACTTGCTTGTGCTTGGAGTTGCCGCCGTCCACGCCTGGCTTCTGATCGGAGAC
CGGACGCTCTCCAACGTCCGCGTGCTCTGCCACCTGCTCGCCCGCGCGGTGGCCCTGCTG
GCCGTCCCCGTCCTCGTGTACTTGCTGTTCTTCTACGTCCACCTGGTGCTGCTCTGCCGC
TCGGGGCCCCACGACCAAATCATGTCCAGTGCTTTCCAGGCCAGCTTGGAGGGGGGGCTG
GCGCGGATCACGCAAGGCCAGCCCCTGGAGGTGGCCTACGGTTCCCAGGTCACTCTGAAG
AACGTCTTTGGCAAACCCGTGCCCTGCTGGCTTCACTCCCACCAGAACACCTACCCCGTG
ATATATGAGAACGGCCGTGGCAGCTCCCACCAGCAGCAGGTGACCTGTTACCCCTTCAAG
GACGTCAATAACTGGTGGATCGTGAAGGATCCCGGGAGGCACCAGCTGGTGGTGAGCAGC
CCTCCGAGGCCCGTGCGGCACGGCGACGTGGTACAGCTCGTACACGGCATGACCACCCGC
TTCCTCACACGCACGATGTGGCGGCCCCCCTGAGCCCCCACTCACAGGAGGTCTCCTGCT
ACGTGGACTACAACATCTCCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCACGTACTTGCTTGTGCTTGGAGTTGCCGCCGTCCACGCCTGGCTTCTGATCGGAGAC
CGGACGCTCTCCAACGTCCGCGTGCTCTGCCACCTGCTCGCCCGCGCGGTGGCCCTGCTG
GCCGTCCCCGTCCTCGTGTACTTGCTGTTCTTCTACGTCCACCTGGTGCTGCTCTGCCGC
TCGGGGCCCCACGACCAAATCATGTCCAGTGCTTTCCAGGCCAGCTTGGAGGGGGGGCTG
GCGCGGATCACGCAAGGCCAGCCCCTGGAGGTGGCCTACGGTTCCCAGGTCACTCTGAAG
AACGTCTTTGGCAAACCCGTGCCCTGCTGGCTTCACTCCCACCAGAACACCTACCCCGTG
ATATATGAGAACGGCCGTGGCAGCTCCCACCAGCAGCAGGTGACCTGTTACCCCTTCAAG
GACGTCAATAACTGGTGGATCGTGAAGGATCCCGGGAGGCACCAGCTGGTGGTGAGCAGC
CCTCCGAGGCCCGTGCGGCACGGCGACGTGGTACAGCTCGTACACGGCATGACCACCCGC
TTCCTCACACGCACGATGTGGCGGCCCCCCTGAGCCCCCACTCACAGGAGGTCTCCTGCT
ACGTGGACTACAACATCTCCATGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57162372|emb|CAI40226.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57162372|emb|CAI40226.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               330-446, - strand, RNAz p=0.921104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               330-446, - strand, RNAz p=0.921104

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               67-232, gnl|bosTau2|chr11 (82080932-82081097)
               

               
               67-232, gnl|Hg17|chr9 (131415192-131415357)
               

               
               67-232, gnl|Mm7|chr2 (32251536-32251701)
               


               
               318-459, gnl|bosTau2|chr11 (82082264-82082406)
               

               
               318-459, gnl|Hg17|chr9 (131416869-131417078)
               

               
               318-459, gnl|Mm7|chr2 (32253285-32253422)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-232, gnl|bosTau2|chr11 (82080932-82081097)
               

               
               67-232, gnl|Hg17|chr9 (131415192-131415357)
               

               
               67-232, gnl|Mm7|chr2 (32251536-32251701)
               


               
               318-459, gnl|bosTau2|chr11 (82082264-82082406)
               

               
               318-459, gnl|Hg17|chr9 (131416869-131417078)
               

               
               318-459, gnl|Mm7|chr2 (32253285-32253422)

	67-232, gnl\|bosTau2\|chr11 (82080932-82081097)
	67-232, gnl\|Hg17\|chr9 (131415192-131415357)
	67-232, gnl\|Mm7\|chr2 (32251536-32251701)

	318-459, gnl\|bosTau2\|chr11 (82082264-82082406)
	318-459, gnl\|Hg17\|chr9 (131416869-131417078)
	318-459, gnl\|Mm7\|chr2 (32253285-32253422)