Non-Coding RNA Search

Ss1.1-Pig2-6J23.5

Sequence:


               
               TCGCCCCCTGTGGTTGCCACGGGTGGGAAGGAGAATGCTTTGAAGGTGTGGGACCTGCAG
GGGTCTGAGGAGCCTGTGTTCAAGGCCAAGAACGTGAGTGACGGTGGGTGGGAAGGGGCC
GGGTCTAAGATCCAGGGAGGCTTCGGCCAAAGACTGTGAGTCAGAGACCAGATTGGCTTT
AGGGGATAACGATGGAGGGTGGGAGGAAGGGGCACTCTGAGCCCCCCACAACCCTGACCC
TCATCTACCTGCCCCACCAGGTGCGGAATGATTGGCTTGACCTGAGAGTTCCCATCTGGG
ACCAGGACATACAGTTCCTCCCTGAGTCACAGAAGCTGGTCACCTGTACAGGGTACCATC
AGGTGACACCCCACCCCACCCCCTATGGCTTTCTGGGTTAAGCAGCCTCCTAGAGGAACA
GCTTTGCTGTGTAATACATATGCTTGGTCCCCGCCATTGGGAGAGCTGCCCTCTCACCAT
CCCTCTTCCATCCCGGAGCTCCCAGAAGAGGGACCACTTCCCCCGCCTGTTCCAGCCCAA
TAGCTGAGCCAGTGACCTCTCAGTGCATTCTAGGAAGGAGTTTCCTGAGCTGTGATTCGT
CCTTTTCTTCCCATCTGTAAGAGAGAAGAAGGGAGTAGCCCCTTCGTTGTAGAATCACAT
GGTGGCGGGTGTCATGAGAAGACACGGGGCTGGGTGCCAAGAGAACTGGGTTCTGGGCCT
GACGCAGCCTCTGACTTGCTTTGGCACCCAAGCCTGAGCCTCTGGTCTCTGGCCTCAGTG
CCTCACCTTCACATAAAAGGCCCAACTGGGGAGCTATCACTTGGTCTCATTTGAAGTCCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCCCCCTGTGGTTGCCACGGGTGGGAAGGAGAATGCTTTGAAGGTGTGGGACCTGCAG
GGGTCTGAGGAGCCTGTGTTCAAGGCCAAGAACGTGAGTGACGGTGGGTGGGAAGGGGCC
GGGTCTAAGATCCAGGGAGGCTTCGGCCAAAGACTGTGAGTCAGAGACCAGATTGGCTTT
AGGGGATAACGATGGAGGGTGGGAGGAAGGGGCACTCTGAGCCCCCCACAACCCTGACCC
TCATCTACCTGCCCCACCAGGTGCGGAATGATTGGCTTGACCTGAGAGTTCCCATCTGGG
ACCAGGACATACAGTTCCTCCCTGAGTCACAGAAGCTGGTCACCTGTACAGGGTACCATC
AGGTGACACCCCACCCCACCCCCTATGGCTTTCTGGGTTAAGCAGCCTCCTAGAGGAACA
GCTTTGCTGTGTAATACATATGCTTGGTCCCCGCCATTGGGAGAGCTGCCCTCTCACCAT
CCCTCTTCCATCCCGGAGCTCCCAGAAGAGGGACCACTTCCCCCGCCTGTTCCAGCCCAA
TAGCTGAGCCAGTGACCTCTCAGTGCATTCTAGGAAGGAGTTTCCTGAGCTGTGATTCGT
CCTTTTCTTCCCATCTGTAAGAGAGAAGAAGGGAGTAGCCCCTTCGTTGTAGAATCACAT
GGTGGCGGGTGTCATGAGAAGACACGGGGCTGGGTGCCAAGAGAACTGGGTTCTGGGCCT
GACGCAGCCTCTGACTTGCTTTGGCACCCAAGCCTGAGCCTCTGGTCTCTGGCCTCAGTG
CCTCACCTTCACATAAAAGGCCCAACTGGGGAGCTATCACTTGGTCTCATTTGAAGTCCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               160-516, - strand, RNAz p=0.959542
               

               
               555-832, + strand, RNAz p=0.950355

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               160-516, - strand, RNAz p=0.959542
               

               
               555-832, + strand, RNAz p=0.950355

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               172-278, - strand, RNAmicro p=0.999807

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-278, - strand, RNAmicro p=0.999807

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-832, gnl|bosTau2|chr29 (32620585-32621432)
               

               
               2-832, gnl|Hg17|chr11 (62359835-62359050)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-832, gnl|bosTau2|chr29 (32620585-32621432)
               

               
               2-832, gnl|Hg17|chr11 (62359835-62359050)

	160-516, - strand, RNAz p=0.959542
	555-832, + strand, RNAz p=0.950355

	2-832, gnl\|bosTau2\|chr29 (32620585-32621432)
	2-832, gnl\|Hg17\|chr11 (62359835-62359050)