Non-Coding RNA Search

Ss1.1-Pig2-70I02.5

Sequence:


               
               CAGCGCGCCGCCGTCCGCTTCCACCAGCTGGACGTCAAGTTCCGCGAGCTGGCGCAGCTG
GTCAGCCAGCAGAGTGGTCTTATCGCCCGCCTGGAGCGCCTGTGCCCGGGGGGTGCGGGC
GGGCAGCAGCAGGTCCTGCCACCGCCCCTGGTGCCTGTGGTTCCAGTCAGTCTGGTGGGT
GGTACTAATGACACCAGCAGAAGGCTAAACTCAGCCCCAAAGCCCCAGAGAGACCAGACC
CTGAGACAGCAGGTGCCCTTGGCCTCTCCTCTGCCCTCAGGGCACCCTGCTGTACCTACC
AAGCCTGCAGGGCCATGGAAGGATTGTGCAGAGGCCCGCCAGGCAGGCCATGGACAGAGT
GGAGTATATGAGCTACGACTGGGCCGGCATGTGGTATCAGCATGGTGCGAGCAACAGCTG
GAAGGTGGAGGCTGGACTGTGATCCAGAGGCGGCAAGATGGCTCTGTCAACTTCTTCACT
ACTTGGCAGCACTACAAGGCCGGCTTTGGTCAGCCTGATGGGGAATACTGGCTAGGCCTT
GAACCTGTGCATCAGCTGACCAGCCGTGGGGACCATGAGCTACTGGTTCTCCTTGAAGAC
TGGGGAGGCCGTGGGGCACGTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCGCGCCGCCGTCCGCTTCCACCAGCTGGACGTCAAGTTCCGCGAGCTGGCGCAGCTG
GTCAGCCAGCAGAGTGGTCTTATCGCCCGCCTGGAGCGCCTGTGCCCGGGGGGTGCGGGC
GGGCAGCAGCAGGTCCTGCCACCGCCCCTGGTGCCTGTGGTTCCAGTCAGTCTGGTGGGT
GGTACTAATGACACCAGCAGAAGGCTAAACTCAGCCCCAAAGCCCCAGAGAGACCAGACC
CTGAGACAGCAGGTGCCCTTGGCCTCTCCTCTGCCCTCAGGGCACCCTGCTGTACCTACC
AAGCCTGCAGGGCCATGGAAGGATTGTGCAGAGGCCCGCCAGGCAGGCCATGGACAGAGT
GGAGTATATGAGCTACGACTGGGCCGGCATGTGGTATCAGCATGGTGCGAGCAACAGCTG
GAAGGTGGAGGCTGGACTGTGATCCAGAGGCGGCAAGATGGCTCTGTCAACTTCTTCACT
ACTTGGCAGCACTACAAGGCCGGCTTTGGTCAGCCTGATGGGGAATACTGGCTAGGCCTT
GAACCTGTGCATCAGCTGACCAGCCGTGGGGACCATGAGCTACTGGTTCTCCTTGAAGAC
TGGGGAGGCCGTGGGGCACGTGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837913|ref|XP_599736.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837913|ref|XP_599736.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               309-427, + strand, RNAz p=0.617059

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-427, + strand, RNAz p=0.617059

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-134, gnl|bosTau2|chr7 (9686694-9686827)
               

               
               1-134, gnl|Hg17|chr19 (10067789-10067656)
               

               
               1-134, gnl|Mm7|chr9 (20754736-20754603)
               


               
               309-504, gnl|bosTau2|chr7 (9688675-9688870)
               

               
               309-504, gnl|Hg17|chr19 (10065558-10065363)
               

               
               309-504, gnl|Mm7|chr9 (20752259-20752064)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-134, gnl|bosTau2|chr7 (9686694-9686827)
               

               
               1-134, gnl|Hg17|chr19 (10067789-10067656)
               

               
               1-134, gnl|Mm7|chr9 (20754736-20754603)
               


               
               309-504, gnl|bosTau2|chr7 (9688675-9688870)
               

               
               309-504, gnl|Hg17|chr19 (10065558-10065363)
               

               
               309-504, gnl|Mm7|chr9 (20752259-20752064)

	1-134, gnl\|bosTau2\|chr7 (9686694-9686827)
	1-134, gnl\|Hg17\|chr19 (10067789-10067656)
	1-134, gnl\|Mm7\|chr9 (20754736-20754603)

	309-504, gnl\|bosTau2\|chr7 (9688675-9688870)
	309-504, gnl\|Hg17\|chr19 (10065558-10065363)
	309-504, gnl\|Mm7\|chr9 (20752259-20752064)