Non-Coding RNA Search

Ss1.1-Pig2-70M20.5

Sequence:


               
               GGTGTGCTGCTGCTGCCGAACCAAGTTCCCGCTGTTCTCCTGGCCGCCGACCTGTCTCTT
TTGCAAGAGAGCTGTCTGCAGTTCCTGCAGCATAAAGATGAAGATGCCTTCTAAGAAGTT
CGCACACATCCCCGTCTACACCCTGGGCTTTGAGAGCCCACAGAGGGCGTCAGCTGTCAG
AGCCCCCCCACCCCTGCGAAGAGACGCCTTCCAGTCCCTGCAGGGGCCGCAGTGGCGGAG
CGTGGAGGAGGAGTTCCCGCACATCTACGCCCACGGCTGCGTCCTGAAGGAGGTCTGCAG
AGACTGCACCAGCTTCGTGGCGGACGTGGTGCGCTCCAGCCGCAAGAGTGTGGACGCGCT
CAACACGCCCCGCCGCGCCCGCCAGACCCAGTCCCTCTACATCCCGAACACCTGGACGCT
CGACCTCAAGTGAGGGTCTCCGGCCCCCGGGCCACCTGGCCAGATGCTTCTCACGGTGCC
CCCAGGTGGCCGTGCCGCCGGGGAGGGGCTGGGCTGGTCCTGGACCAGGCTGAGAAGTGC
CTTTCCCGGGAAGACCCGCCGGGGCGCCCTGCGGAGCGAGCATGTACATATATACATAGA
TTCATCCGCGGGACTCTTGCACTCACAGCCTCTATATTTATACTCATGATTCCTGGCCCG
AGTTCATTGGGGTCAGGCTCACTGCAGGACCCTCCCTGGGGGAGGACGTTTCCTCTCAGG
ATTCCTTGGGTGGGGCGGGAGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGTGCTGCTGCTGCCGAACCAAGTTCCCGCTGTTCTCCTGGCCGCCGACCTGTCTCTT
TTGCAAGAGAGCTGTCTGCAGTTCCTGCAGCATAAAGATGAAGATGCCTTCTAAGAAGTT
CGCACACATCCCCGTCTACACCCTGGGCTTTGAGAGCCCACAGAGGGCGTCAGCTGTCAG
AGCCCCCCCACCCCTGCGAAGAGACGCCTTCCAGTCCCTGCAGGGGCCGCAGTGGCGGAG
CGTGGAGGAGGAGTTCCCGCACATCTACGCCCACGGCTGCGTCCTGAAGGAGGTCTGCAG
AGACTGCACCAGCTTCGTGGCGGACGTGGTGCGCTCCAGCCGCAAGAGTGTGGACGCGCT
CAACACGCCCCGCCGCGCCCGCCAGACCCAGTCCCTCTACATCCCGAACACCTGGACGCT
CGACCTCAAGTGAGGGTCTCCGGCCCCCGGGCCACCTGGCCAGATGCTTCTCACGGTGCC
CCCAGGTGGCCGTGCCGCCGGGGAGGGGCTGGGCTGGTCCTGGACCAGGCTGAGAAGTGC
CTTTCCCGGGAAGACCCGCCGGGGCGCCCTGCGGAGCGAGCATGTACATATATACATAGA
TTCATCCGCGGGACTCTTGCACTCACAGCCTCTATATTTATACTCATGATTCCTGGCCCG
AGTTCATTGGGGTCAGGCTCACTGCAGGACCCTCCCTGGGGGAGGACGTTTCCTCTCAGG
ATTCCTTGGGTGGGGCGGGAGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62665415|ref|XP_574251.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62665415|ref|XP_574251.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               211-328, - strand, RNAz p=0.712053
               

               
               526-644, - strand, RNAz p=0.912308

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               211-328, - strand, RNAz p=0.712053
               

               
               526-644, - strand, RNAz p=0.912308

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               211-742, gnl|bosTau2|chr18 (15568281-15568788)
               

               
               211-742, gnl|Hg17|chr16 (88463955-88464427)
               

               
               211-742, gnl|Mm7|chr8 (122010238-122010684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-742, gnl|bosTau2|chr18 (15568281-15568788)
               

               
               211-742, gnl|Hg17|chr16 (88463955-88464427)
               

               
               211-742, gnl|Mm7|chr8 (122010238-122010684)

	211-328, - strand, RNAz p=0.712053
	526-644, - strand, RNAz p=0.912308

	211-742, gnl\|bosTau2\|chr18 (15568281-15568788)
	211-742, gnl\|Hg17\|chr16 (88463955-88464427)
	211-742, gnl\|Mm7\|chr8 (122010238-122010684)