Non-Coding RNA Search

Ss1.1-Pig2-71G20.5

Sequence:


               
               AGCTGAGAACCTCTGACTCAATCAGGACCTTGAACCTTGAGTTCACAGAGACTCTAAAAG
CTCCAGAAACAAAGACTTCGTGGACACAGTCCCTCAAAATCAAAAGCCCACTGCCTTTAG
CAGCAACATAAATACAGGAACCATTTCCTTTGACCTGTGGGAGAATCCAGGATGGAAACT
TCAACCTCAAAGGGCTATGATGCAACCACAGAATATGACTATGAGGGCTCAACCCCGTGC
CAGAAGGTACAAGAGAGGGCCTTTGGGGCCCAGCTGCTGCCGCCCTTGTACTCCCTGGTA
TTTGTCATTGGCCTGATCGGCAACATCCTGGTGGTCCTGGTCCTCCTGCAGTACAAGAGG
CTCAGAAGCATGACCACCATCTACCTCCTCAACCTGGCCATTTCTGACCTGATCTTCCTC
TTTACACTGCCTTTCTGGATTGACTACAAGCTGAAGGATGACTGGATTTTTGGCGATCAC
ATGTGTAAGTTGCTCTCTGGGCTCTATTTCATTGGCTTGTACAGTGAAATCTTCTTCATC
ATCCTGCTGACCATCGACAGGTACCTAGCCATCGTCCATGCCGTGTTTGCCCTGCGGGCT
CGGACCATCACCTTTGGTATCATCACCAGCATTGTCGTCTGGGTCCTGGCCATCTTGGCT
GCTGTCCCCGGCTTCCACTTTTCCAAGACCCAGTGGGAGTTCAGTCACTTCACCTGCAGC
CTTCATTTTCCTTATGAAAACCTAACAAATTGGAAACGGTTCCAGGCTCTGAAAATGAAC
ATCTTGGGGCTGGTGTTGCCTCTATTGGTCATGATCATCTGCTACACAGGGATCATAAAG
ATTCTGCTCAGAAGACCAAATGAGAAGAAATCCAAAGCTGTGCGTCTGATTTTTGTCATC
ATGATCATCTTCTTTCTCTTTTGGACTCCCTACAATCTGACTGTGTTTGTTTCTGCTTTC
CAAGAATCCCTGTTCACCGATCAGTGTAGGCAGAGCAGACAGCTGGACCTGGCCATACAA
GTGACAGAGGTCATCGCCTACACGCACTGCTGCATCAACCCTGTGATCTACGTCTTTGTC
GGGGAGAGATTCCGCAAGTATCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTGAGAACCTCTGACTCAATCAGGACCTTGAACCTTGAGTTCACAGAGACTCTAAAAG
CTCCAGAAACAAAGACTTCGTGGACACAGTCCCTCAAAATCAAAAGCCCACTGCCTTTAG
CAGCAACATAAATACAGGAACCATTTCCTTTGACCTGTGGGAGAATCCAGGATGGAAACT
TCAACCTCAAAGGGCTATGATGCAACCACAGAATATGACTATGAGGGCTCAACCCCGTGC
CAGAAGGTACAAGAGAGGGCCTTTGGGGCCCAGCTGCTGCCGCCCTTGTACTCCCTGGTA
TTTGTCATTGGCCTGATCGGCAACATCCTGGTGGTCCTGGTCCTCCTGCAGTACAAGAGG
CTCAGAAGCATGACCACCATCTACCTCCTCAACCTGGCCATTTCTGACCTGATCTTCCTC
TTTACACTGCCTTTCTGGATTGACTACAAGCTGAAGGATGACTGGATTTTTGGCGATCAC
ATGTGTAAGTTGCTCTCTGGGCTCTATTTCATTGGCTTGTACAGTGAAATCTTCTTCATC
ATCCTGCTGACCATCGACAGGTACCTAGCCATCGTCCATGCCGTGTTTGCCCTGCGGGCT
CGGACCATCACCTTTGGTATCATCACCAGCATTGTCGTCTGGGTCCTGGCCATCTTGGCT
GCTGTCCCCGGCTTCCACTTTTCCAAGACCCAGTGGGAGTTCAGTCACTTCACCTGCAGC
CTTCATTTTCCTTATGAAAACCTAACAAATTGGAAACGGTTCCAGGCTCTGAAAATGAAC
ATCTTGGGGCTGGTGTTGCCTCTATTGGTCATGATCATCTGCTACACAGGGATCATAAAG
ATTCTGCTCAGAAGACCAAATGAGAAGAAATCCAAAGCTGTGCGTCTGATTTTTGTCATC
ATGATCATCTTCTTTCTCTTTTGGACTCCCTACAATCTGACTGTGTTTGTTTCTGCTTTC
CAAGAATCCCTGTTCACCGATCAGTGTAGGCAGAGCAGACAGCTGGACCTGGCCATACAA
GTGACAGAGGTCATCGCCTACACGCACTGCTGCATCAACCCTGTGATCTACGTCTTTGTC
GGGGAGAGATTCCGCAAGTATCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|48675909|ref|NP_001001621.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|48675909|ref|NP_001001621.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               182-735, - strand, RNAz p=0.978053
               

               
               579-738, - strand, RNAz p=0.598015

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-735, - strand, RNAz p=0.978053
               

               
               579-738, - strand, RNAz p=0.598015

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               100-1104, gnl|bosTau2|chr22 (45007860-45008853)
               

               
               100-1104, gnl|Hg17|chr3 (46220835-46219873)
               

               
               100-1104, gnl|Mm7|chr9 (123683465-123682443)
               


               
               106-1103, gnl|bosTau2|chr22 (45032921-45033919)
               

               
               106-1103, gnl|Hg17|chr3 (46220877-46219874)
               

               
               106-1103, gnl|Mm7|chr9 (123683459-123682459)
               


               
               268-653, gnl|bosTau2|chr19 (34059275-34059663)
               

               
               268-653, gnl|Hg17|chr17 (35965485-35965097)
               

               
               268-653, gnl|Mm7|chr11 (99254962-99254574)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-1104, gnl|bosTau2|chr22 (45007860-45008853)
               

               
               100-1104, gnl|Hg17|chr3 (46220835-46219873)
               

               
               100-1104, gnl|Mm7|chr9 (123683465-123682443)
               


               
               106-1103, gnl|bosTau2|chr22 (45032921-45033919)
               

               
               106-1103, gnl|Hg17|chr3 (46220877-46219874)
               

               
               106-1103, gnl|Mm7|chr9 (123683459-123682459)
               


               
               268-653, gnl|bosTau2|chr19 (34059275-34059663)
               

               
               268-653, gnl|Hg17|chr17 (35965485-35965097)
               

               
               268-653, gnl|Mm7|chr11 (99254962-99254574)

	182-735, - strand, RNAz p=0.978053
	579-738, - strand, RNAz p=0.598015

	100-1104, gnl\|bosTau2\|chr22 (45007860-45008853)
	100-1104, gnl\|Hg17\|chr3 (46220835-46219873)
	100-1104, gnl\|Mm7\|chr9 (123683465-123682443)

	106-1103, gnl\|bosTau2\|chr22 (45032921-45033919)
	106-1103, gnl\|Hg17\|chr3 (46220877-46219874)
	106-1103, gnl\|Mm7\|chr9 (123683459-123682459)

	268-653, gnl\|bosTau2\|chr19 (34059275-34059663)
	268-653, gnl\|Hg17\|chr17 (35965485-35965097)
	268-653, gnl\|Mm7\|chr11 (99254962-99254574)