Ss1.1-Pig2-71H13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCTCATGGAAAACTGTAATGAGTTCGTGGGCCTGTGGCTGGGCATGGCCAAGCTGGGC GTGGAGGCGGCGCTCATCAACACCAACCTGCGGCGGGACGCCCTGCGCCACTGCCTGACC TCCTCCCGCGCCCGGGCCCTCATCTTTGGCAGCGAGATGGCCCCAGCCGTGCTAGAGATC CATGCCAGCCTGGACCCCTCGCTCAGCCTCTTCTGCTCCGGTCCCTGGGAGCCCAGCGCA GTGCCCGCCGGCACGGAGCACCTGGACCCCCTGCTGGAAGATGCCCCCAAGCACCTGCCC AGCCGCCCCAACAAGGGCTTTGTAGATAAGCTCTTCTACATCTACACGTCCGGCACCACG GNGCTGCCCAAAGCTGCCATCGTGGTGCACAGCAGGTATTACCGCATGGCTGCCCTGGTG TACTACGGATTCCGCATGCGGCCGGATGACGTCCTCTATGACTGCCTCCCCCTCTACCAC ACGGCAGGCAACATCGTGGGCGTCGGGCAGTGCCTGCTCCACGGCCTGACGGTGGTCATC CGGAAGAAGTTCTCCGCTTCTCGGTTCTGGGATGATTGTGTCAAGTACAACTGCACGATC GTGCAGTACATTGGCGAGCTGTGCAGATACCTCCTCAACCAGCCACCCCGGGAGGCGGAA AAGCAGCACCGGGTGCGCATGGCACTTGGCAATGGCCTCCGGCAGTCCATCTGGACCAGC TTTTCCAGCCGCTTCCACATCCCCCAGGTGGCCGAGTTCTATGGGGCCACTGAGTGCAAC TGCAGCCTGGGCAACTTTGACGGCCAGGTGGGGGCGTGTGGCTTCAACAGCCGCATCCTG TCCTTTGTGTACCCCATCCGGCTGGTCCGTGTCAACGAGGACACTATGGAGCTGATCCGG GGACCCGACGGCGTTTGCCTTCCTTGCCGGCCAGGTGAGCCAGGCCAGCTGGTGGGCACC ATCGTCCAGAAGGACCCCCTGCGGCGCTTCGACGGCTACCTCAACCAGGGCGCCAACAAT AAAAAGATCGCCAAGGATGTCTTCAAGAAGGGGGACCAGGCCTACCTCACTGGCGACGTG CTGGTGATGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCTCATGGAAAACTGTAATGAGTTCGTGGGCCTGTGGCTGGGCATGGCCAAGCTGGGC GTGGAGGCGGCGCTCATCAACACCAACCTGCGGCGGGACGCCCTGCGCCACTGCCTGACC TCCTCCCGCGCCCGGGCCCTCATCTTTGGCAGCGAGATGGCCCCAGCCGTGCTAGAGATC CATGCCAGCCTGGACCCCTCGCTCAGCCTCTTCTGCTCCGGTCCCTGGGAGCCCAGCGCA GTGCCCGCCGGCACGGAGCACCTGGACCCCCTGCTGGAAGATGCCCCCAAGCACCTGCCC AGCCGCCCCAACAAGGGCTTTGTAGATAAGCTCTTCTACATCTACACGTCCGGCACCACG GNGCTGCCCAAAGCTGCCATCGTGGTGCACAGCAGGTATTACCGCATGGCTGCCCTGGTG TACTACGGATTCCGCATGCGGCCGGATGACGTCCTCTATGACTGCCTCCCCCTCTACCAC ACGGCAGGCAACATCGTGGGCGTCGGGCAGTGCCTGCTCCACGGCCTGACGGTGGTCATC CGGAAGAAGTTCTCCGCTTCTCGGTTCTGGGATGATTGTGTCAAGTACAACTGCACGATC GTGCAGTACATTGGCGAGCTGTGCAGATACCTCCTCAACCAGCCACCCCGGGAGGCGGAA AAGCAGCACCGGGTGCGCATGGCACTTGGCAATGGCCTCCGGCAGTCCATCTGGACCAGC TTTTCCAGCCGCTTCCACATCCCCCAGGTGGCCGAGTTCTATGGGGCCACTGAGTGCAAC TGCAGCCTGGGCAACTTTGACGGCCAGGTGGGGGCGTGTGGCTTCAACAGCCGCATCCTG TCCTTTGTGTACCCCATCCGGCTGGTCCGTGTCAACGAGGACACTATGGAGCTGATCCGG GGACCCGACGGCGTTTGCCTTCCTTGCCGGCCAGGTGAGCCAGGCCAGCTGGTGGGCACC ATCGTCCAGAAGGACCCCCTGCGGCGCTTCGACGGCTACCTCAACCAGGGCGCCAACAAT AAAAAGATCGCCAAGGATGTCTTCAAGAAGGGGGACCAGGCCTACCTCACTGGCGACGTG CTGGTGATGGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 203-347, - strand, RNAz p=0.99069 | |
| 636-755, - strand, RNAz p=0.976494 | |
| 948-1069, - strand, RNAz p=0.829752 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 203-347, - strand, RNAz p=0.99069 | |
| 636-755, - strand, RNAz p=0.976494 | |
| 948-1069, - strand, RNAz p=0.829752 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 5-161, gnl|bosTau2|chr7 (4897483-4897327) | |
| 5-161, gnl|canFam2|chr20 (48327038-48326652) | |
| 5-161, gnl|danRer3|chr3 (4322392-4322006) | |
| 5-161, gnl|echTel1|scaffold_27790 (1351-965) | |
| 5-161, gnl|fr1|chrUn (38735492-38735878) | |
| 5-161, gnl|galGal2|chrUn (123837837-123837451) | |
| 5-161, gnl|hg17|chr19 (17458386-17458772) | |
| 5-161, gnl|Hg17|chr19 (17458605-17458761) | |
| 5-161, gnl|loxAfr1|scaffold_150480 (594-208) | |
| 5-161, gnl|mm7|chr8 (70046580-70046966) | |
| 5-161, gnl|Mm7|chr8 (70046799-70046955) | |
| 5-161, gnl|monDom2|scaffold_106 (1257844-1257458) | |
| 5-161, gnl|rheMac2|chr19 (17047338-17047724) | |
| 5-161, gnl|rn3|chr16 (18779499-18779885) | |
| 5-161, gnl|tetNig1|chr3 (11151134-11151520) | |
| 5-161, gnl|xenTro1|scaffold_750 (40248-39856) | |
| 164-347, gnl|bosTau2|chr11 (78243962-78244144) | |
| 164-347, gnl|Hg17|chr9 (128190375-128190560) | |
| 164-347, gnl|Mm7|chr2 (29814664-29814841) | |
| 597-813, gnl|bosTau2|chr11 (78247203-78247419) | |
| 597-813, gnl|Hg17|chr9 (128194857-128195073) | |
| 597-813, gnl|Mm7|chr2 (29818496-29818712) | |
| 917-1069, gnl|bosTau2|chr11 (78248221-78248372) | |
| 917-1069, gnl|Hg17|chr9 (128196870-128197020) | |
| 917-1069, gnl|Mm7|chr2 (29819551-29819710) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-161, gnl|bosTau2|chr7 (4897483-4897327) | |
| 5-161, gnl|canFam2|chr20 (48327038-48326652) | |
| 5-161, gnl|danRer3|chr3 (4322392-4322006) | |
| 5-161, gnl|echTel1|scaffold_27790 (1351-965) | |
| 5-161, gnl|fr1|chrUn (38735492-38735878) | |
| 5-161, gnl|galGal2|chrUn (123837837-123837451) | |
| 5-161, gnl|hg17|chr19 (17458386-17458772) | |
| 5-161, gnl|Hg17|chr19 (17458605-17458761) | |
| 5-161, gnl|loxAfr1|scaffold_150480 (594-208) | |
| 5-161, gnl|mm7|chr8 (70046580-70046966) | |
| 5-161, gnl|Mm7|chr8 (70046799-70046955) | |
| 5-161, gnl|monDom2|scaffold_106 (1257844-1257458) | |
| 5-161, gnl|rheMac2|chr19 (17047338-17047724) | |
| 5-161, gnl|rn3|chr16 (18779499-18779885) | |
| 5-161, gnl|tetNig1|chr3 (11151134-11151520) | |
| 5-161, gnl|xenTro1|scaffold_750 (40248-39856) | |
| 164-347, gnl|bosTau2|chr11 (78243962-78244144) | |
| 164-347, gnl|Hg17|chr9 (128190375-128190560) | |
| 164-347, gnl|Mm7|chr2 (29814664-29814841) | |
| 597-813, gnl|bosTau2|chr11 (78247203-78247419) | |
| 597-813, gnl|Hg17|chr9 (128194857-128195073) | |
| 597-813, gnl|Mm7|chr2 (29818496-29818712) | |
| 917-1069, gnl|bosTau2|chr11 (78248221-78248372) | |
| 917-1069, gnl|Hg17|chr9 (128196870-128197020) | |
| 917-1069, gnl|Mm7|chr2 (29819551-29819710) |