Non-Coding RNA Search

Ss1.1-Pig2-71J09.5

Sequence:


               
               GGGCCCCTCATGTCTGCGGGGGATCCAGGCTACCTCCTGGCCTAAGCGGGGAAACAGAGT
CCCCTGTTTCCTGTCTGAGGGAAGCGGGGGGCTCCCGGGGCAGGAGCAGGCTGTGGGGAG
ATGCCAGGCCCTGAGGCCAGGCCCTCACCCCTGCAGAGCCTGGACGACGCCCTGCGGGAC
CTCTCAGCCGCCATGCACCGCGACCTGTCGGAGAAGCAGGCGCTGTGCTACGCCCTTTCC
TTCCCGCCGACCAAGCTGGAGCTGTGTGCCACTCGGCCTGAGGGCACCGACTCTTTCATC
TTCGAGTTCCCGCACCCTGACGCCCGTCTTGGTTTCGAGCAGGCCTTTGATGAGGCCAAG
AGAAAACTGGGTAAGTCAGGACCCGGGCTGGTGCCCCCTCCCGGAACCTCCAGGTAGCGG
GCAGCACCTTGCCCTGTCTGTGACATCAGGAGCCAGCAATCTGGGACTGCCATGTCCTGT
GTTCCGGTCCCCGCTGGTGGGAGAGTGGACTGAGACTTCTGCAGAGAAATGCAGAAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCCCTCATGTCTGCGGGGGATCCAGGCTACCTCCTGGCCTAAGCGGGGAAACAGAGT
CCCCTGTTTCCTGTCTGAGGGAAGCGGGGGGCTCCCGGGGCAGGAGCAGGCTGTGGGGAG
ATGCCAGGCCCTGAGGCCAGGCCCTCACCCCTGCAGAGCCTGGACGACGCCCTGCGGGAC
CTCTCAGCCGCCATGCACCGCGACCTGTCGGAGAAGCAGGCGCTGTGCTACGCCCTTTCC
TTCCCGCCGACCAAGCTGGAGCTGTGTGCCACTCGGCCTGAGGGCACCGACTCTTTCATC
TTCGAGTTCCCGCACCCTGACGCCCGTCTTGGTTTCGAGCAGGCCTTTGATGAGGCCAAG
AGAAAACTGGGTAAGTCAGGACCCGGGCTGGTGCCCCCTCCCGGAACCTCCAGGTAGCGG
GCAGCACCTTGCCCTGTCTGTGACATCAGGAGCCAGCAATCTGGGACTGCCATGTCCTGT
GTTCCGGTCCCCGCTGGTGGGAGAGTGGACTGAGACTTCTGCAGAGAAATGCAGAAGTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-184, + strand, RNAz p=0.736708

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-184, + strand, RNAz p=0.736708

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               106-202, - strand, RNAmicro p=0.999494
               

               
               110-189, + strand, RNAmicro p=0.993649

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               106-202, - strand, RNAmicro p=0.999494
               

               
               110-189, + strand, RNAmicro p=0.993649

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-539, gnl|bosTau2|chr15 (41712149-41712698)
               

               
               1-539, gnl|Hg17|chr11 (72748859-72749386)
               

               
               1-539, gnl|Mm7|chr7 (96927784-96927284)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-539, gnl|bosTau2|chr15 (41712149-41712698)
               

               
               1-539, gnl|Hg17|chr11 (72748859-72749386)
               

               
               1-539, gnl|Mm7|chr7 (96927784-96927284)

	106-202, - strand, RNAmicro p=0.999494
	110-189, + strand, RNAmicro p=0.993649

	1-539, gnl\|bosTau2\|chr15 (41712149-41712698)
	1-539, gnl\|Hg17\|chr11 (72748859-72749386)
	1-539, gnl\|Mm7\|chr7 (96927784-96927284)