Non-Coding RNA Search

Ss1.1-Pig2-71L16.5

Sequence:


               
               GCTCGCACCCCAATCCAGCCTTCCTCCTCCTGCCCCATCGCCCACCCGCGCCATGCATGA
TGGGTAAAGCAATACTGCCGCTGCCCCCACCCCTGCTTCTGCTGCCTGTTTGGGAGGGGG
GGCGGTGAGGTGGGGGCAGCGGCTCCGCACCCCTCCTTCTTGCTGATTTGCACACACTGG
CCGCTTCAGACATGCACTACTGGGGCCCGCCCCTCCCCCGCCCCCTCCCAGCCCAGCGGG
GCTGGCGTTGGGCTGGACTGGCTCCGGGCAGGGGGTTCTGGGACCCACTCCGACCCCCAG
CGACACTTCCCTCCCTGCTTCCTCTGGCTGGACCTGGGGTCTCCTCTCCCTGTGATGCAC
TCTTGCCCCAGCCCAACCCGCCCTCTCTCACCAGCCTTGGATTGTGGCCACCTAGAAAGG
GGCCCATTCAGCCTCGTCTCTCTTTACACAAGTAGTTTTGTTCATGGAATAAAGATTCTT
GGACTTGACTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCGCACCCCAATCCAGCCTTCCTCCTCCTGCCCCATCGCCCACCCGCGCCATGCATGA
TGGGTAAAGCAATACTGCCGCTGCCCCCACCCCTGCTTCTGCTGCCTGTTTGGGAGGGGG
GGCGGTGAGGTGGGGGCAGCGGCTCCGCACCCCTCCTTCTTGCTGATTTGCACACACTGG
CCGCTTCAGACATGCACTACTGGGGCCCGCCCCTCCCCCGCCCCCTCCCAGCCCAGCGGG
GCTGGCGTTGGGCTGGACTGGCTCCGGGCAGGGGGTTCTGGGACCCACTCCGACCCCCAG
CGACACTTCCCTCCCTGCTTCCTCTGGCTGGACCTGGGGTCTCCTCTCCCTGTGATGCAC
TCTTGCCCCAGCCCAACCCGCCCTCTCTCACCAGCCTTGGATTGTGGCCACCTAGAAAGG
GGCCCATTCAGCCTCGTCTCTCTTTACACAAGTAGTTTTGTTCATGGAATAAAGATTCTT
GGACTTGACTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57036655|ref|XP_549496.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57036655|ref|XP_549496.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               37-233, - strand, RNAz p=0.908355
               

               
               268-373, - strand, RNAz p=0.996791

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-233, - strand, RNAz p=0.908355
               

               
               268-373, - strand, RNAz p=0.996791

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-492, gnl|bosTau2|chr18 (39992906-39992399)
               

               
               1-492, gnl|Hg17|chr19 (40222692-40223197)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-492, gnl|bosTau2|chr18 (39992906-39992399)
               

               
               1-492, gnl|Hg17|chr19 (40222692-40223197)

	37-233, - strand, RNAz p=0.908355
	268-373, - strand, RNAz p=0.996791

	1-492, gnl\|bosTau2\|chr18 (39992906-39992399)
	1-492, gnl\|Hg17\|chr19 (40222692-40223197)