Non-Coding RNA Search

Ss1.1-Pig2-72D08.5

Sequence:


               
               CCACGCGTCCGGCTCAAGAGAGAAGGTCTTAGCCAGCGTTTCTGTCTATGCTCATGAATG
GAAATGGTGTTTCTGGAAAACTAGTCTATGGTTCAGCCTTGTCAGCTTCATCTCCACGTC
CAAGCCTTCTGGGCCCCTTTTAGCATCGCATCCAACCGTTTCATCTTCCAGATGAGAAAC
TTCAGCTCCAGCAAAGGGAAAACAGCTTGCTCGAGGTTCTGTAGTCAGCTAGTGGCAGAG
CTGGGATGAGAACTCACTACCCAGGGGTCTGTTTTTGTCACCACCTGTGGGGGTGCTGCA
TTTCCTGGGGCCTTGAGTTTGGCAGACGCCAGGTAGCTGGTGTCTTGACACTGGCTGGGA
GGTGTCAGCCGCCTATGATGCTGGTGGGCCTCTGTCTTGCTTCTTTTATCAAGAAAGATG
CTCTCTGAGATGTTGTCCATGAGGGCCCTGGCGTCTGGGATATAGCTGGGGGCAAAAAAA
AGAGGGAAGGAACGAGCTTCCAGGAGACTGTTCCAGTGACATCCATTCTTCAACCTTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGCGTCCGGCTCAAGAGAGAAGGTCTTAGCCAGCGTTTCTGTCTATGCTCATGAATG
GAAATGGTGTTTCTGGAAAACTAGTCTATGGTTCAGCCTTGTCAGCTTCATCTCCACGTC
CAAGCCTTCTGGGCCCCTTTTAGCATCGCATCCAACCGTTTCATCTTCCAGATGAGAAAC
TTCAGCTCCAGCAAAGGGAAAACAGCTTGCTCGAGGTTCTGTAGTCAGCTAGTGGCAGAG
CTGGGATGAGAACTCACTACCCAGGGGTCTGTTTTTGTCACCACCTGTGGGGGTGCTGCA
TTTCCTGGGGCCTTGAGTTTGGCAGACGCCAGGTAGCTGGTGTCTTGACACTGGCTGGGA
GGTGTCAGCCGCCTATGATGCTGGTGGGCCTCTGTCTTGCTTCTTTTATCAAGAAAGATG
CTCTCTGAGATGTTGTCCATGAGGGCCCTGGCGTCTGGGATATAGCTGGGGGCAAAAAAA
AGAGGGAAGGAACGAGCTTCCAGGAGACTGTTCCAGTGACATCCATTCTTCAACCTTTGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               295-397, - strand, RNAz p=0.594201

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-397, - strand, RNAz p=0.594201

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               12-532, gnl|bosTau2|chr19 (18431933-18432461)
               

               
               12-532, gnl|canFam2|chr9 (50340677-50341271)
               

               
               12-532, gnl|dasNov1|scaffold_228703 (3375-3968)
               

               
               12-532, gnl|echTel1|scaffold_195424 (4506-5119)
               

               
               12-532, gnl|hg17|chr17 (2886099-2886741)
               

               
               12-532, gnl|Hg17|chr17 (2886147-2886675)
               

               
               12-532, gnl|loxAfr1|scaffold_9146 (99482-100100)
               

               
               12-532, gnl|mm7|chr11 (74466735-74466117)
               

               
               12-532, gnl|Mm7|chr11 (74466685-74466236)
               

               
               12-532, gnl|rheMac2|chr16 (2866069-2866686)
               

               
               12-532, gnl|rn3|chr10 (61692551-61691998)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-532, gnl|bosTau2|chr19 (18431933-18432461)
               

               
               12-532, gnl|canFam2|chr9 (50340677-50341271)
               

               
               12-532, gnl|dasNov1|scaffold_228703 (3375-3968)
               

               
               12-532, gnl|echTel1|scaffold_195424 (4506-5119)
               

               
               12-532, gnl|hg17|chr17 (2886099-2886741)
               

               
               12-532, gnl|Hg17|chr17 (2886147-2886675)
               

               
               12-532, gnl|loxAfr1|scaffold_9146 (99482-100100)
               

               
               12-532, gnl|mm7|chr11 (74466735-74466117)
               

               
               12-532, gnl|Mm7|chr11 (74466685-74466236)
               

               
               12-532, gnl|rheMac2|chr16 (2866069-2866686)
               

               
               12-532, gnl|rn3|chr10 (61692551-61691998)

	12-532, gnl\|bosTau2\|chr19 (18431933-18432461)
	12-532, gnl\|canFam2\|chr9 (50340677-50341271)
	12-532, gnl\|dasNov1\|scaffold_228703 (3375-3968)
	12-532, gnl\|echTel1\|scaffold_195424 (4506-5119)
	12-532, gnl\|hg17\|chr17 (2886099-2886741)
	12-532, gnl\|Hg17\|chr17 (2886147-2886675)
	12-532, gnl\|loxAfr1\|scaffold_9146 (99482-100100)
	12-532, gnl\|mm7\|chr11 (74466735-74466117)
	12-532, gnl\|Mm7\|chr11 (74466685-74466236)
	12-532, gnl\|rheMac2\|chr16 (2866069-2866686)
	12-532, gnl\|rn3\|chr10 (61692551-61691998)