Ss1.1-Pig2-72L02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTAAGACTGCTGAGCGGAGATACGAAGGCGGCGAAAGCCCCTGTAATTGCCCTGCGATCC GAGGGGGAGAATAAGACAGGAGGGCTGCGATCGAGGCTGTTTATAGCCCTGTTGCGACTG CGCTGGGAGGGGAGGCTGAGGCTTAGGTCGGTGGCTCCTTGGATGACAGCGTGCTGCGAA GCATCCCATGGGCCCGGCCCCCATGGCATTCCACAACAAAGACGTGGGACCCCTATCGCC CTCCCCCTGGGATGCCATCCTGGAGGCCGTCAGGGAGCAGCTCCCGTCTCTGGACTCTGA TTCATCCTTGTCAGACTGCGAGGAAGAGGAGCTGTTCATCTTCCAGCGAGATCAAACCAC CCTGATTCCAGACTTGTCAGAGGAACTGGCTGAAGACTGTGCTGGGCCCTGGGTCACTCC CTCTGGGTTTCCTCCTGAGCCAGCGGTGCACGTGGAGCCCACCCCAGAACCTTGGAGGGA CTATAGCCCGAGGCTCCGGGAGTCGGCCTCCCTGGAAGGAAGGGCCCCCGGGGGACCTCT GCAGAGCTGTGGCCAGAGCAGCTCCCACCTCAGGATGCCCGTGGAGGCCGCCGCGTGGCA GGAAGACGAGGGGGGCAAGTCCTTCAACACCAGCGCATCCCAGAGTGGCAGCCAGGGGCC ACAGGGTCAGGCCACCCTCCCCCCTGGGGAAGCAGCCCTGCAGACAGAGGGCCCGGGCGC TGCCTCAGGGGCCCCGGCAGGCTCCGACTCCACGAACCACAGGAGCCTCCGGAGGGAGAG AAGGAAGATGATCGAGAGGGACATACTCCACAAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTAAGACTGCTGAGCGGAGATACGAAGGCGGCGAAAGCCCCTGTAATTGCCCTGCGATCC GAGGGGGAGAATAAGACAGGAGGGCTGCGATCGAGGCTGTTTATAGCCCTGTTGCGACTG CGCTGGGAGGGGAGGCTGAGGCTTAGGTCGGTGGCTCCTTGGATGACAGCGTGCTGCGAA GCATCCCATGGGCCCGGCCCCCATGGCATTCCACAACAAAGACGTGGGACCCCTATCGCC CTCCCCCTGGGATGCCATCCTGGAGGCCGTCAGGGAGCAGCTCCCGTCTCTGGACTCTGA TTCATCCTTGTCAGACTGCGAGGAAGAGGAGCTGTTCATCTTCCAGCGAGATCAAACCAC CCTGATTCCAGACTTGTCAGAGGAACTGGCTGAAGACTGTGCTGGGCCCTGGGTCACTCC CTCTGGGTTTCCTCCTGAGCCAGCGGTGCACGTGGAGCCCACCCCAGAACCTTGGAGGGA CTATAGCCCGAGGCTCCGGGAGTCGGCCTCCCTGGAAGGAAGGGCCCCCGGGGGACCTCT GCAGAGCTGTGGCCAGAGCAGCTCCCACCTCAGGATGCCCGTGGAGGCCGCCGCGTGGCA GGAAGACGAGGGGGGCAAGTCCTTCAACACCAGCGCATCCCAGAGTGGCAGCCAGGGGCC ACAGGGTCAGGCCACCCTCCCCCCTGGGGAAGCAGCCCTGCAGACAGAGGGCCCGGGCGC TGCCTCAGGGGCCCCGGCAGGCTCCGACTCCACGAACCACAGGAGCCTCCGGAGGGAGAG AAGGAAGATGATCGAGAGGGACATACTCCACAAGGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 199-296, - strand, RNAz p=0.894262 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 199-296, - strand, RNAz p=0.894262 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 199-306, gnl|bosTau2|chr25 (4645484-4645591) | |
| 199-306, gnl|canFam2|chr6 (39717907-39717761) | |
| 199-306, gnl|echTel1|scaffold_278272 (6118-6249) | |
| 199-306, gnl|galGal2|chrUn (23683355-23683183) | |
| 199-306, gnl|hg17|chr16 (4726501-4726653) | |
| 199-306, gnl|Hg17|chr16 (4726513-4726641) | |
| 199-306, gnl|loxAfr1|scaffold_29667 (19666-19812) | |
| 199-306, gnl|mm7|chr16 (4639079-4639210) | |
| 199-306, gnl|Mm7|chr16 (4639091-4639198) | |
| 199-306, gnl|panTro1|chr18 (4676816-4676968) | |
| 199-306, gnl|rheMac2|chr20 (4902001-4902153) | |
| 199-306, gnl|rn3|chr10 (10730334-10730203) | |
| 310-439, gnl|bosTau2|chr25 (4645987-4646116) | |
| 310-439, gnl|canFam2|chr6 (39716609-39716516) | |
| 310-439, gnl|galGal2|chrUn (23681345-23681249) | |
| 310-439, gnl|hg17|chr16 (4727793-4727886) | |
| 310-439, gnl|Hg17|chr16 (4727801-4727948) | |
| 310-439, gnl|mm7|chr16 (4640060-4640153) | |
| 310-439, gnl|Mm7|chr16 (4640068-4640215) | |
| 310-439, gnl|panTro1|chr18 (4678112-4678204) | |
| 310-439, gnl|rn3|chr10 (10729186-10729093) | |
| 552-816, gnl|bosTau2|chr25 (4647366-4647630) | |
| 552-816, gnl|canFam2|chr6 (39714594-39714245) | |
| 552-816, gnl|echTel1|scaffold_259301 (1010-1296) | |
| 552-816, gnl|hg17|chr16 (4730116-4730480) | |
| 552-816, gnl|Hg17|chr16 (4730249-4730522) | |
| 552-816, gnl|mm7|chr16 (4642234-4642586) | |
| 552-816, gnl|Mm7|chr16 (4642364-4642624) | |
| 552-816, gnl|panTro1|chr18 (4680423-4680787) | |
| 552-816, gnl|rn3|chr10 (10727789-10727456) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 199-306, gnl|bosTau2|chr25 (4645484-4645591) | |
| 199-306, gnl|canFam2|chr6 (39717907-39717761) | |
| 199-306, gnl|echTel1|scaffold_278272 (6118-6249) | |
| 199-306, gnl|galGal2|chrUn (23683355-23683183) | |
| 199-306, gnl|hg17|chr16 (4726501-4726653) | |
| 199-306, gnl|Hg17|chr16 (4726513-4726641) | |
| 199-306, gnl|loxAfr1|scaffold_29667 (19666-19812) | |
| 199-306, gnl|mm7|chr16 (4639079-4639210) | |
| 199-306, gnl|Mm7|chr16 (4639091-4639198) | |
| 199-306, gnl|panTro1|chr18 (4676816-4676968) | |
| 199-306, gnl|rheMac2|chr20 (4902001-4902153) | |
| 199-306, gnl|rn3|chr10 (10730334-10730203) | |
| 310-439, gnl|bosTau2|chr25 (4645987-4646116) | |
| 310-439, gnl|canFam2|chr6 (39716609-39716516) | |
| 310-439, gnl|galGal2|chrUn (23681345-23681249) | |
| 310-439, gnl|hg17|chr16 (4727793-4727886) | |
| 310-439, gnl|Hg17|chr16 (4727801-4727948) | |
| 310-439, gnl|mm7|chr16 (4640060-4640153) | |
| 310-439, gnl|Mm7|chr16 (4640068-4640215) | |
| 310-439, gnl|panTro1|chr18 (4678112-4678204) | |
| 310-439, gnl|rn3|chr10 (10729186-10729093) | |
| 552-816, gnl|bosTau2|chr25 (4647366-4647630) | |
| 552-816, gnl|canFam2|chr6 (39714594-39714245) | |
| 552-816, gnl|echTel1|scaffold_259301 (1010-1296) | |
| 552-816, gnl|hg17|chr16 (4730116-4730480) | |
| 552-816, gnl|Hg17|chr16 (4730249-4730522) | |
| 552-816, gnl|mm7|chr16 (4642234-4642586) | |
| 552-816, gnl|Mm7|chr16 (4642364-4642624) | |
| 552-816, gnl|panTro1|chr18 (4680423-4680787) | |
| 552-816, gnl|rn3|chr10 (10727789-10727456) |