Non-Coding RNA Search

Ss1.1-Pig2-75J13.5

Sequence:


               
               CCTTTTCTGTTAGTAGTGTATTGTAAATTAACTAGTGTTTGTGTGTGTTTCCCATATTTC
TTCATTCAATAAAATAAACAAGAGGTGTCTGATTGATCTATGTCCACAGCACCATGCTTT
GTACCTAGTAGATAATCCCTATGTATCTTGGTTTTTTAAATTTATATGAAGGGAAAATTT
CATCAAGATCGTGTGTCTTTTCACAAAGTCACTTAAAAACAACTATCTTGTTAAATCCTA
ACAGACAATATGCACTAAATCTAAAGATGCCAGCATGCCTAACCAAAATGCTTTTCCTGT
TGGCTGGTGTTAGAAGTAGCAGTTCAGTCTCTTCACCAAAAATGCAACCAATGCTATTTA
AATGCATATTATCATGCAGTATAGTGTGGCTTTTGTCTGTTTTATTTTGCTCAGTTCAAG
AACAGATTGGGAAGCTGGTTGGCAAAAATAAACCCTATTTGGTATATGAATGTCTTTGTG
CTGAAAGAGAATTTGCTACATATAGAATACTTTGATTTCATATTTTTAATGACCTTTTTA
AAATGCAGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTCTGTTAGTAGTGTATTGTAAATTAACTAGTGTTTGTGTGTGTTTCCCATATTTC
TTCATTCAATAAAATAAACAAGAGGTGTCTGATTGATCTATGTCCACAGCACCATGCTTT
GTACCTAGTAGATAATCCCTATGTATCTTGGTTTTTTAAATTTATATGAAGGGAAAATTT
CATCAAGATCGTGTGTCTTTTCACAAAGTCACTTAAAAACAACTATCTTGTTAAATCCTA
ACAGACAATATGCACTAAATCTAAAGATGCCAGCATGCCTAACCAAAATGCTTTTCCTGT
TGGCTGGTGTTAGAAGTAGCAGTTCAGTCTCTTCACCAAAAATGCAACCAATGCTATTTA
AATGCATATTATCATGCAGTATAGTGTGGCTTTTGTCTGTTTTATTTTGCTCAGTTCAAG
AACAGATTGGGAAGCTGGTTGGCAAAAATAAACCCTATTTGGTATATGAATGTCTTTGTG
CTGAAAGAGAATTTGCTACATATAGAATACTTTGATTTCATATTTTTAATGACCTTTTTA
AAATGCAGGGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               141-256, + strand, RNAz p=0.550691

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               141-256, + strand, RNAz p=0.550691

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               34-548, gnl|bosTau2|chr22 (30164781-30165294)
               

               
               34-548, gnl|Hg17|chr3 (62292179-62292703)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-548, gnl|bosTau2|chr22 (30164781-30165294)
               

               
               34-548, gnl|Hg17|chr3 (62292179-62292703)

	34-548, gnl\|bosTau2\|chr22 (30164781-30165294)
	34-548, gnl\|Hg17\|chr3 (62292179-62292703)