Non-Coding RNA Search

Ss1.1-Pig2-76A06.5

Sequence:


               
               ACATGGAGGAGTCATGTCCTGCCCTCCCAAGCCAGCCAGGCCTGGGGGTCACAACTGCAG
GCAAGTCCCTGGGGCTGAGGGGCTAGGGCCACACACTGCACTCACATGGAGCCAATGAAA
GCGACGTCAAACCAGAAAGCCAGACCGTGAACCAGCCCGGAATGCAGCATGTGGAATTTG
AATGGGATTTCTATCCTGGAAGGCAAAGGGCAGTGATTGCTGGGGAAGCTGAACAGGGGC
GAGGAGAAGTGTCGAGTGTAGGAGGTCAGGGCTCCTGTTTGCCTGCCCTGGGGAGAATTC
TGCCTGAGGGAGCCAGCTGGGGTCCCGACCTCCAGCAGGAGCCAGGCCCAGGAGGATGGG
GCATGGTTGCAGGTTACCTGTGCAAATCTCCTTCTTTGGCTTCTAAGAAGTTCACCGTGT
ACTTGACAGACTTGGCCATAAGGATCCGGATGTCAAATGTGTCCTGAGAGAGATCACAGG
TGTGACCTGGCTTCAGGCCAAGGGGCCAGCAATGAAGAGAAAAGCCCTGCCCCTCTTCCT
GAGTCTGGCCATGGCCTCTAGGCCATTCAGCCAAAAGCAGTTTGCTGTTCTCAGATGTAA
CGGAGGGTGAATTGGTATAACACCATGGAGGGCAGCTAGGTGACACCTCTCAAAATGACA
ACTGTTCATCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATGGAGGAGTCATGTCCTGCCCTCCCAAGCCAGCCAGGCCTGGGGGTCACAACTGCAG
GCAAGTCCCTGGGGCTGAGGGGCTAGGGCCACACACTGCACTCACATGGAGCCAATGAAA
GCGACGTCAAACCAGAAAGCCAGACCGTGAACCAGCCCGGAATGCAGCATGTGGAATTTG
AATGGGATTTCTATCCTGGAAGGCAAAGGGCAGTGATTGCTGGGGAAGCTGAACAGGGGC
GAGGAGAAGTGTCGAGTGTAGGAGGTCAGGGCTCCTGTTTGCCTGCCCTGGGGAGAATTC
TGCCTGAGGGAGCCAGCTGGGGTCCCGACCTCCAGCAGGAGCCAGGCCCAGGAGGATGGG
GCATGGTTGCAGGTTACCTGTGCAAATCTCCTTCTTTGGCTTCTAAGAAGTTCACCGTGT
ACTTGACAGACTTGGCCATAAGGATCCGGATGTCAAATGTGTCCTGAGAGAGATCACAGG
TGTGACCTGGCTTCAGGCCAAGGGGCCAGCAATGAAGAGAAAAGCCCTGCCCCTCTTCCT
GAGTCTGGCCATGGCCTCTAGGCCATTCAGCCAAAAGCAGTTTGCTGTTCTCAGATGTAA
CGGAGGGTGAATTGGTATAACACCATGGAGGGCAGCTAGGTGACACCTCTCAAAATGACA
ACTGTTCATCTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               190-402, - strand, RNAz p=0.99256
               

               
               483-631, - strand, RNAz p=0.72755

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-402, - strand, RNAz p=0.99256
               

               
               483-631, - strand, RNAz p=0.72755

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               353-430, + strand, RNAmicro p=0.939934

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               353-430, + strand, RNAmicro p=0.939934

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               30-672, gnl|bosTau2|chr7 (10023631-10022978)
               

               
               30-672, gnl|Hg17|chr19 (10891714-10891060)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-672, gnl|bosTau2|chr7 (10023631-10022978)
               

               
               30-672, gnl|Hg17|chr19 (10891714-10891060)

	190-402, - strand, RNAz p=0.99256
	483-631, - strand, RNAz p=0.72755

	30-672, gnl\|bosTau2\|chr7 (10023631-10022978)
	30-672, gnl\|Hg17\|chr19 (10891714-10891060)