Ss1.1-Pig2-76E21.5
|
GGGAGGGAGCGCAGCTTGGTTGCTCCGTAGTACGGCGGCTCGCAAGGGAGAATCCCGAGC
GGGGCTCCGGGACGCACGGAGAGGCGGGCGGGCGGGCGGGGATGGTGTGCAGGGCTGCGG
CTCCTGCGTCCCTTCTCGCGGCGAGTGAGCTGCACTGATTTGTCTGTGGGGCGGCAGCGC
GGACCCGCCTGGAAATGAGGCGTCCATTAGCAAGGTGAAAGTAACAGAACCATGGCTCAG
TTTCCAACACCTTTTGGTGGTAGCCTGGATATTTGGGCCATAACTGTAGAGGAAAGAGCA
AAGCATGATCAGCAGTTCCATAGCTTAAAGCCAATATCTGGATTTATTACTGGTGATCAA
GCTAGAAACTTTTTTTTTCAATCTGGGTTACCTCAACCTGTTTTAGCACAGATATGGGCG
CTGGCTGACATGAATAATGACGGAAGGATGGATCAAGTGGAGTTTTCCATAGCCATGAAA
CTCATCAAGCTGAAGCTCCAAGGCTATCAGCTCCCCTCCGCACTTCCCCCTGTCATGAAG
CAGCAACCAGTTGCTATTTCTAGTGCACCAGCGTTCGGTATTGGAGGCATCGCCAGCATG
CCGCCACTGACCGCTGTTGCTCCCGTGCCAATGGGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGGAGGGAGCGCAGCTTGGTTGCTCCGTAGTACGGCGGCTCGCAAGGGAGAATCCCGAGC
GGGGCTCCGGGACGCACGGAGAGGCGGGCGGGCGGGCGGGGATGGTGTGCAGGGCTGCGG
CTCCTGCGTCCCTTCTCGCGGCGAGTGAGCTGCACTGATTTGTCTGTGGGGCGGCAGCGC
GGACCCGCCTGGAAATGAGGCGTCCATTAGCAAGGTGAAAGTAACAGAACCATGGCTCAG
TTTCCAACACCTTTTGGTGGTAGCCTGGATATTTGGGCCATAACTGTAGAGGAAAGAGCA
AAGCATGATCAGCAGTTCCATAGCTTAAAGCCAATATCTGGATTTATTACTGGTGATCAA
GCTAGAAACTTTTTTTTTCAATCTGGGTTACCTCAACCTGTTTTAGCACAGATATGGGCG
CTGGCTGACATGAATAATGACGGAAGGATGGATCAAGTGGAGTTTTCCATAGCCATGAAA
CTCATCAAGCTGAAGCTCCAAGGCTATCAGCTCCCCTCCGCACTTCCCCCTGTCATGAAG
CAGCAACCAGTTGCTATTTCTAGTGCACCAGCGTTCGGTATTGGAGGCATCGCCAGCATG
CCGCCACTGACCGCTGTTGCTCCCGTGCCAATGGGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
416-579, gnl|bosTau2|chr1 (1501791-1501954) |
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416-579, gnl|canFam2|chr31 (31344439-31344634) |
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416-579, gnl|danRer3|chr1 (48391555-48391383) |
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416-579, gnl|dasNov1|scaffold_44751 (7656-7851) |
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416-579, gnl|echTel1|scaffold_224327 (9361-9166) |
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416-579, gnl|fr1|chrUn (195220976-195220809) |
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416-579, gnl|galGal2|chr1 (99230208-99230394) |
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416-579, gnl|hg17|chr21 (34029213-34029408) |
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416-579, gnl|Hg17|chr21 (34029218-34029381) |
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416-579, gnl|loxAfr1|scaffold_160 (118647-118452) |
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416-579, gnl|mm7|chr16 (91843947-91844133) |
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416-579, gnl|Mm7|chr16 (91843952-91844115) |
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416-579, gnl|monDom2|scaffold_29 (14015753-14015555) |
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416-579, gnl|oryCun1|scaffold_202500 (5768-5572) |
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416-579, gnl|panTro1|chr22 (34017974-34018169) |
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416-579, gnl|rheMac2|chr3 (12830251-12830059) |
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416-579, gnl|rn3|chr11 (31827199-31827393) |
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416-579, gnl|tetNig1|chr17 (8605514-8605324) |
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416-579, gnl|xenTro1|scaffold_497 (919169-919361) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
416-579, gnl|bosTau2|chr1 (1501791-1501954) |
|
416-579, gnl|canFam2|chr31 (31344439-31344634) |
|
416-579, gnl|danRer3|chr1 (48391555-48391383) |
|
416-579, gnl|dasNov1|scaffold_44751 (7656-7851) |
|
416-579, gnl|echTel1|scaffold_224327 (9361-9166) |
|
416-579, gnl|fr1|chrUn (195220976-195220809) |
|
416-579, gnl|galGal2|chr1 (99230208-99230394) |
|
416-579, gnl|hg17|chr21 (34029213-34029408) |
|
416-579, gnl|Hg17|chr21 (34029218-34029381) |
|
416-579, gnl|loxAfr1|scaffold_160 (118647-118452) |
|
416-579, gnl|mm7|chr16 (91843947-91844133) |
|
416-579, gnl|Mm7|chr16 (91843952-91844115) |
|
416-579, gnl|monDom2|scaffold_29 (14015753-14015555) |
|
416-579, gnl|oryCun1|scaffold_202500 (5768-5572) |
|
416-579, gnl|panTro1|chr22 (34017974-34018169) |
|
416-579, gnl|rheMac2|chr3 (12830251-12830059) |
|
416-579, gnl|rn3|chr11 (31827199-31827393) |
|
416-579, gnl|tetNig1|chr17 (8605514-8605324) |
|
416-579, gnl|xenTro1|scaffold_497 (919169-919361) |
