Non-Coding RNA Search

Ss1.1-Pig2-76F06.5

Sequence:


               
               TGACCAGTGTTTCTGACCGTGTTCTGGGAACTGGCCCGGGAGGCACTTCGGGAACGAGGG
GTCCTGCTGGTGGTGCTGCATACAGCAGAGGTGCCAGGGGCCATCAGCAGGCTCGGGCTC
TGGGAATTCCTGCTGTAAGGAAGCCTGTTGAGGTTTATCGAACCTGCTGTATCCCACACT
TAGTAGACTAGAGCCCTCATTTTGTGACATTTCCCTTTCATGAAACATTTTCAGAAACGT
CGATCTGGGCGGGTGCCCTCATTTTGCACATGAGGAGAGACTTGAGCCCTGGGGGTGGTT
TGATTCGGATCCCACTGAATGAGGGCCTTCTTTGGAGTCCCACGGCGCCCGTCTTCTGGG
GCTGATCTGGGGGTGCAGGTTCCCTGAGGGGAGAGTGCTGTGTGCGCGTCTGACCTGTCT
CCTGCCGCCGTAGGGCGTGCTGTGCCGGACGCTGCAAGGCCACGGCCACTGGGTGAACAC
CATGGCCCTGAGCACTGACTACGCCCTGCGCACGGGGGCCTTTGAGCCAGCGGAGGCCTC
CGTCAACGCCCAAGACCTCCGAGGGTCCTGAGTTAAAGGAGAGGGCCCTGAGCCGCTACA
ACCTCGTGCGGGGCCGGGGCCTGGAGAGGCTGGTGTCTGGCTCATACGACTTCACCCTGT
TCCTGTGGTCCCCGGCGGAGGACAAGAAGCCCCTGGCACGGATGACGGGGCACCAGGCCC
TCATCAACCAGGTGCTCTTCTCCCCAGATTCCCGCATCATCGCCAGCGCCTCCTTTGACA
AGTCCATCAAGCTGTGGGATGGCAGGACGGGCAAGTACCTGGCTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGACCAGTGTTTCTGACCGTGTTCTGGGAACTGGCCCGGGAGGCACTTCGGGAACGAGGG
GTCCTGCTGGTGGTGCTGCATACAGCAGAGGTGCCAGGGGCCATCAGCAGGCTCGGGCTC
TGGGAATTCCTGCTGTAAGGAAGCCTGTTGAGGTTTATCGAACCTGCTGTATCCCACACT
TAGTAGACTAGAGCCCTCATTTTGTGACATTTCCCTTTCATGAAACATTTTCAGAAACGT
CGATCTGGGCGGGTGCCCTCATTTTGCACATGAGGAGAGACTTGAGCCCTGGGGGTGGTT
TGATTCGGATCCCACTGAATGAGGGCCTTCTTTGGAGTCCCACGGCGCCCGTCTTCTGGG
GCTGATCTGGGGGTGCAGGTTCCCTGAGGGGAGAGTGCTGTGTGCGCGTCTGACCTGTCT
CCTGCCGCCGTAGGGCGTGCTGTGCCGGACGCTGCAAGGCCACGGCCACTGGGTGAACAC
CATGGCCCTGAGCACTGACTACGCCCTGCGCACGGGGGCCTTTGAGCCAGCGGAGGCCTC
CGTCAACGCCCAAGACCTCCGAGGGTCCTGAGTTAAAGGAGAGGGCCCTGAGCCGCTACA
ACCTCGTGCGGGGCCGGGGCCTGGAGAGGCTGGTGTCTGGCTCATACGACTTCACCCTGT
TCCTGTGGTCCCCGGCGGAGGACAAGAAGCCCCTGGCACGGATGACGGGGCACCAGGCCC
TCATCAACCAGGTGCTCTTCTCCCCAGATTCCCGCATCATCGCCAGCGCCTCCTTTGACA
AGTCCATCAAGCTGTGGGATGGCAGGACGGGCAAGTACCTGGCTTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               15-169, - strand, RNAz p=0.997987

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               15-169, - strand, RNAz p=0.997987

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               113-168, + strand, RNAmicro p=0.985467

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               113-168, + strand, RNAmicro p=0.985467

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-322, gnl|bosTau2|chr19 (9016160-9015838)
               

               
               3-322, gnl|Hg17|chr17 (30488074-30487729)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-322, gnl|bosTau2|chr19 (9016160-9015838)
               

               
               3-322, gnl|Hg17|chr17 (30488074-30487729)

	3-322, gnl\|bosTau2\|chr19 (9016160-9015838)
	3-322, gnl\|Hg17\|chr17 (30488074-30487729)