Non-Coding RNA Search

Ss1.1-Pig2-76N19.5

Sequence:


               
               CGATGAAAGATGTAAACTGGGATTTAAGCACTCATCTTTAATGTAGGTAAATCTATAAGA
GGAACAGGGGAATTTACAGTGCTTTTGAAAATACTGAAAGTGTAATCATCTTATCCTAAT
TTAAATCTTTTGTTTTTTTTAATATCTTGGTTTTTAAAGATTTAAGGAGAGAGTCTAATA
TCCCCAGAGGGGTAACGGGGGAAGGACAAAAGTACGTTTTTAGGATTCTTCTCTAACAGA
CCTACTTTTCCAAGATTATGGAACATTTCCAAATTTCATTAAACTATTTGGAGTAAATTT
TATATAAGGCAGTATCTACTGGCATCTAATTCTAGTTTACTCAAGTCAACCTTTAAGGCT
TTTTAGCAACAATTATATGATGATCATCTTTTTTTTAGAGAAAGGAAATTTTTCCCTAGC
TTTTCCGTGAACTAGCTAATATCACTCTTCGTATAATCCATGAGATTCTGAATACTTTTC
TTGACTTGCTCAAATTTCTATCTTGTGAATAGTTCACAGTAAGTAGACACAGTGCTAACT
TACAAACGGTATCTTTAAAAATTTGCTACAAAAGCTTATTTTTTTCTATGGAACTGTCTT
TAAAAGCAACAAAACAAAATACTTAAAAATTCACCTAAAACATTTTTCTCCCTGTTACCA
CATTCTTTATTCTGTGTTGTAAATGAAAAATGATTACCGGTAGTTAGCAATGTGAGCCTG
TTACAGAAATTTGCAAAGCCTGAATACACATACATTGCCTTAGCCCATCAGTAGACTAGA
GGACATATATTAAGTAAGTTTGTCTGTCTTTGGCTATTGTTGGACAAAATTTTATGTATG
TGCACGATTTTTTTTTTCTGTTTTCTTCAAAGAGTGAATTAAATGAAAGTGTGGGAGCCA
GTTTTATTATTTCATATTATGAGTGTTCTGGATCCTTTCACTCTGTATACCATTTTCTTG
TAAGGGCAGCATTTGCAGACTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGATGAAAGATGTAAACTGGGATTTAAGCACTCATCTTTAATGTAGGTAAATCTATAAGA
GGAACAGGGGAATTTACAGTGCTTTTGAAAATACTGAAAGTGTAATCATCTTATCCTAAT
TTAAATCTTTTGTTTTTTTTAATATCTTGGTTTTTAAAGATTTAAGGAGAGAGTCTAATA
TCCCCAGAGGGGTAACGGGGGAAGGACAAAAGTACGTTTTTAGGATTCTTCTCTAACAGA
CCTACTTTTCCAAGATTATGGAACATTTCCAAATTTCATTAAACTATTTGGAGTAAATTT
TATATAAGGCAGTATCTACTGGCATCTAATTCTAGTTTACTCAAGTCAACCTTTAAGGCT
TTTTAGCAACAATTATATGATGATCATCTTTTTTTTAGAGAAAGGAAATTTTTCCCTAGC
TTTTCCGTGAACTAGCTAATATCACTCTTCGTATAATCCATGAGATTCTGAATACTTTTC
TTGACTTGCTCAAATTTCTATCTTGTGAATAGTTCACAGTAAGTAGACACAGTGCTAACT
TACAAACGGTATCTTTAAAAATTTGCTACAAAAGCTTATTTTTTTCTATGGAACTGTCTT
TAAAAGCAACAAAACAAAATACTTAAAAATTCACCTAAAACATTTTTCTCCCTGTTACCA
CATTCTTTATTCTGTGTTGTAAATGAAAAATGATTACCGGTAGTTAGCAATGTGAGCCTG
TTACAGAAATTTGCAAAGCCTGAATACACATACATTGCCTTAGCCCATCAGTAGACTAGA
GGACATATATTAAGTAAGTTTGTCTGTCTTTGGCTATTGTTGGACAAAATTTTATGTATG
TGCACGATTTTTTTTTTCTGTTTTCTTCAAAGAGTGAATTAAATGAAAGTGTGGGAGCCA
GTTTTATTATTTCATATTATGAGTGTTCTGGATCCTTTCACTCTGTATACCATTTTCTTG
TAAGGGCAGCATTTGCAGACTAGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               743-859, - strand, RNAz p=0.989262

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               743-859, - strand, RNAz p=0.989262

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-984, gnl|bosTau2|chr10 (38918197-38917216)
               

               
               2-984, gnl|Hg17|chr15 (53692362-53691382)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-984, gnl|bosTau2|chr10 (38918197-38917216)
               

               
               2-984, gnl|Hg17|chr15 (53692362-53691382)

	2-984, gnl\|bosTau2\|chr10 (38918197-38917216)
	2-984, gnl\|Hg17\|chr15 (53692362-53691382)