Ss1.1-Pig2-77I16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGAACAGGTGACGGTGGAGGCCGGCCTCCTCCTGGCTGACCTGCACCCACAGCTGGA CAAACACGGCCTGGCCTTGTCCAACCTGGGAGCTGTGTCTGATGTGACTGCAGGTGGCGT CATTGGGTCCGGGACGCACAACACAGGGATCAAGCACGGCCTCCTGGCCACGCAGGTGGT GGAGCTGACCCTGCTGACGCCCGATGGGACCGTGCTTGTGTGCTCCGAGTCTAGCAACGC AGATGTGTTCCAGGCGGCACGGGTACACCTGGGCTGCCTTGGGGTCATCCTCACTGTAAC CCTGCAGTGTGTGCCCCAGTTCCACTTGCAGGAGACGACCTTCCCCTCAACCTTGAAAGA GGTTCTGGACAACCTGGACAGCCACCTGAAGAAATCCGAATACTTCCGCTTCCTCTGGTT CCCACACAGCGAGAACGTCAGCGTCATCTACCAGGACCACACCAACAAGCCTCCCTCCTC TTCAGCCAACTGGTTTTGGGACTACGCCATTGGGTTCTATTTACTGGAGTTCCTGCTCTG GATCAGCACCTTCGTGCCAGGCCTCGTGGGCTGGATCAATCGCTTTTTCTTCTGGCTTCT GTTCAATGGGAAGAAGGAAAACTGCAACCTCAGCCACAAGATCTTCACCTACGAGTGCCG CTTCAAGCAGCATGTCCAGGACTGGGCCATCCCCAGAGAGAAGACCAAGGAGGCCCTCCT GGAGCTGAAGGCCATGCTGGAGGCCCACCCCAAGGTGGTGGCCCACTACCCCGTGGAGGT GCGCTTCACTCGGGCGGACGACATCCTGCTGAGCCCCTGCTTCCAGAGGGACAGCTGCTA CATGAACATCATCATGTACAGGCCCTACGGCAAAGACGTGCCTCGGCTGGACTACTGGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGAACAGGTGACGGTGGAGGCCGGCCTCCTCCTGGCTGACCTGCACCCACAGCTGGA CAAACACGGCCTGGCCTTGTCCAACCTGGGAGCTGTGTCTGATGTGACTGCAGGTGGCGT CATTGGGTCCGGGACGCACAACACAGGGATCAAGCACGGCCTCCTGGCCACGCAGGTGGT GGAGCTGACCCTGCTGACGCCCGATGGGACCGTGCTTGTGTGCTCCGAGTCTAGCAACGC AGATGTGTTCCAGGCGGCACGGGTACACCTGGGCTGCCTTGGGGTCATCCTCACTGTAAC CCTGCAGTGTGTGCCCCAGTTCCACTTGCAGGAGACGACCTTCCCCTCAACCTTGAAAGA GGTTCTGGACAACCTGGACAGCCACCTGAAGAAATCCGAATACTTCCGCTTCCTCTGGTT CCCACACAGCGAGAACGTCAGCGTCATCTACCAGGACCACACCAACAAGCCTCCCTCCTC TTCAGCCAACTGGTTTTGGGACTACGCCATTGGGTTCTATTTACTGGAGTTCCTGCTCTG GATCAGCACCTTCGTGCCAGGCCTCGTGGGCTGGATCAATCGCTTTTTCTTCTGGCTTCT GTTCAATGGGAAGAAGGAAAACTGCAACCTCAGCCACAAGATCTTCACCTACGAGTGCCG CTTCAAGCAGCATGTCCAGGACTGGGCCATCCCCAGAGAGAAGACCAAGGAGGCCCTCCT GGAGCTGAAGGCCATGCTGGAGGCCCACCCCAAGGTGGTGGCCCACTACCCCGTGGAGGT GCGCTTCACTCGGGCGGACGACATCCTGCTGAGCCCCTGCTTCCAGAGGGACAGCTGCTA CATGAACATCATCATGTACAGGCCCTACGGCAAAGACGTGCCTCGGCTGGACTACTGGCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 745-862, - strand, RNAz p=0.539674 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 745-862, - strand, RNAz p=0.539674 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 172-367, gnl|bosTau2|chr5 (33883478-33883283) | |
| 172-367, gnl|canFam2|chr25 (33015035-33014856) | |
| 172-367, gnl|dasNov1|scaffold_65358 (5767-5595) | |
| 172-367, gnl|echTel1|scaffold_286703 (49805-49637) | |
| 172-367, gnl|hg17|chr8 (27482643-27482817) | |
| 172-367, gnl|loxAfr1|scaffold_29496 (10428-10602) | |
| 172-367, gnl|Mm7|chr14 (60860487-60860291) | |
| 172-367, gnl|oryCun1|scaffold_176524 (10572-10403) | |
| 172-367, gnl|rheMac2|chr8 (27716684-27716858) | |
| 172-367, gnl|rn3|chr15 (45439851-45439708) | |
| 682-862, gnl|bosTau2|chr5 (33871089-33870909) | |
| 682-862, gnl|canFam2|chr25 (33000005-32999813) | |
| 682-862, gnl|dasNov1|scaffold_108486 (85-278) | |
| 682-862, gnl|echTel1|scaffold_207666 (1015-1212) | |
| 682-862, gnl|galGal2|chr3 (103106582-103106779) | |
| 682-862, gnl|hg17|chr8 (27500365-27500556) | |
| 682-862, gnl|Hg17|chr8 (27500364-27500543) | |
| 682-862, gnl|loxAfr1|scaffold_87992 (4564-4364) | |
| 682-862, gnl|mm7|chr14 (60851023-60850831) | |
| 682-862, gnl|Mm7|chr14 (60851022-60850842) | |
| 682-862, gnl|oryCun1|scaffold_196173 (48258-48066) | |
| 682-862, gnl|panTro1|chr7 (28473314-28473505) | |
| 682-862, gnl|rheMac2|chr8 (27733258-27733449) | |
| 682-862, gnl|rn3|chr15 (45429917-45429725) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-367, gnl|bosTau2|chr5 (33883478-33883283) | |
| 172-367, gnl|canFam2|chr25 (33015035-33014856) | |
| 172-367, gnl|dasNov1|scaffold_65358 (5767-5595) | |
| 172-367, gnl|echTel1|scaffold_286703 (49805-49637) | |
| 172-367, gnl|hg17|chr8 (27482643-27482817) | |
| 172-367, gnl|loxAfr1|scaffold_29496 (10428-10602) | |
| 172-367, gnl|Mm7|chr14 (60860487-60860291) | |
| 172-367, gnl|oryCun1|scaffold_176524 (10572-10403) | |
| 172-367, gnl|rheMac2|chr8 (27716684-27716858) | |
| 172-367, gnl|rn3|chr15 (45439851-45439708) | |
| 682-862, gnl|bosTau2|chr5 (33871089-33870909) | |
| 682-862, gnl|canFam2|chr25 (33000005-32999813) | |
| 682-862, gnl|dasNov1|scaffold_108486 (85-278) | |
| 682-862, gnl|echTel1|scaffold_207666 (1015-1212) | |
| 682-862, gnl|galGal2|chr3 (103106582-103106779) | |
| 682-862, gnl|hg17|chr8 (27500365-27500556) | |
| 682-862, gnl|Hg17|chr8 (27500364-27500543) | |
| 682-862, gnl|loxAfr1|scaffold_87992 (4564-4364) | |
| 682-862, gnl|mm7|chr14 (60851023-60850831) | |
| 682-862, gnl|Mm7|chr14 (60851022-60850842) | |
| 682-862, gnl|oryCun1|scaffold_196173 (48258-48066) | |
| 682-862, gnl|panTro1|chr7 (28473314-28473505) | |
| 682-862, gnl|rheMac2|chr8 (27733258-27733449) | |
| 682-862, gnl|rn3|chr15 (45429917-45429725) |