Non-Coding RNA Search

Ss1.1-Pig2-80G03.5

Sequence:


               
               CGGAGGCTGGCTTGGGGCTTGTGCCCGCGGGAGCCCCAGGTGGGCCCCCACCCATGAGGG
TGCTGGCAGGGAACGGACCCAGCTCCGACCTATCCACGGGGAGCAGTGGGGGCTACCCCG
ACTTCCCTGCCAGTCCCGCCTCCTGGCTGGACGAGGTGGATCACGCTCAGTTCTGACTGA
GGCCCCAGCTCCGTGGAGCACCAGACACGAGCACTGCCCCTGGCTGGGTGGTCGGGAGCC
GCGCTCTCCTTTCCCGAAGCCCTGGGCCTCTAAAGGACACAGGGTCACCGGCGGGGCACA
GGCTGAGGACTGTCCAGCCCGGCGGCCCTGGCCCCGGGCAGAGGGACTTTCTCCCGGTCT
CGAGGCTCCTTCTGGGACAAGGGGCGGAGCCCACCTGGTGGCTGCTCAGCAAGCCTTGTT
TTGTAAGCAGATTCCTCCCTTTATCAACCAAAATTAACTGAGTGCTTGCTGCTCTTTCTA
GACCGGAGTGGTCAGCCCCCGAAGCCGGGGAGGGGGGCTCTCCCCAGCCCAGAGCAGCAC
AGCCCTCAGACTGGAAGATGCTTTAATTTTTAAAATTAAAAAATAATACGAACTGTGCTT
CCATTTCCCAGCTTCCTCTGTCTGAGTTCTGCCGCCCCCCGGCCCTCCCACTTTAGTTCG
GAGCGAGGCCTTGTCTGTCCAGGCGGCCGGGGGGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGGCTGGCTTGGGGCTTGTGCCCGCGGGAGCCCCAGGTGGGCCCCCACCCATGAGGG
TGCTGGCAGGGAACGGACCCAGCTCCGACCTATCCACGGGGAGCAGTGGGGGCTACCCCG
ACTTCCCTGCCAGTCCCGCCTCCTGGCTGGACGAGGTGGATCACGCTCAGTTCTGACTGA
GGCCCCAGCTCCGTGGAGCACCAGACACGAGCACTGCCCCTGGCTGGGTGGTCGGGAGCC
GCGCTCTCCTTTCCCGAAGCCCTGGGCCTCTAAAGGACACAGGGTCACCGGCGGGGCACA
GGCTGAGGACTGTCCAGCCCGGCGGCCCTGGCCCCGGGCAGAGGGACTTTCTCCCGGTCT
CGAGGCTCCTTCTGGGACAAGGGGCGGAGCCCACCTGGTGGCTGCTCAGCAAGCCTTGTT
TTGTAAGCAGATTCCTCCCTTTATCAACCAAAATTAACTGAGTGCTTGCTGCTCTTTCTA
GACCGGAGTGGTCAGCCCCCGAAGCCGGGGAGGGGGGCTCTCCCCAGCCCAGAGCAGCAC
AGCCCTCAGACTGGAAGATGCTTTAATTTTTAAAATTAAAAAATAATACGAACTGTGCTT
CCATTTCCCAGCTTCCTCTGTCTGAGTTCTGCCGCCCCCCGGCCCTCCCACTTTAGTTCG
GAGCGAGGCCTTGTCTGTCCAGGCGGCCGGGGGGCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               42-161, - strand, RNAz p=0.896253
               

               
               466-576, - strand, RNAz p=0.999693

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, - strand, RNAz p=0.896253
               

               
               466-576, - strand, RNAz p=0.999693

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-648, gnl|bosTau2|chr28 (12831647-12832278)
               

               
               3-648, gnl|Hg17|chr9 (136315289-136314583)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-648, gnl|bosTau2|chr28 (12831647-12832278)
               

               
               3-648, gnl|Hg17|chr9 (136315289-136314583)

	42-161, - strand, RNAz p=0.896253
	466-576, - strand, RNAz p=0.999693

	3-648, gnl\|bosTau2\|chr28 (12831647-12832278)
	3-648, gnl\|Hg17\|chr9 (136315289-136314583)