Ss1.1-Pig2-80I13.5
|
GGCTGGTTGCTCTAGGGAAGTACCCGGCCGTGTTCACGAAAGAGAACGTGCATCCTGCCA
CCCGAAGTAACTGTGGTGTCAGGAAAGCTCTAGAAGCACTGGGTCCTCCATCCGTCACAG
GTCATGGTCTCTGTTTCCACAGCTAAGGAGGCACACAAGCCCCCCGTGTTTCTGGAGAAG
CTGCAGAACACGGGTGTGGCCGACGGGTACCCGGTGCGCCTGGAGTGCCGGGTGGCGGGG
GCACCGCCACCACAGATCTTCTGGAAGAAGGAAAACGAATCGCTCACTCACAGCACCGAC
CGAGTGAGGTAAGAGCCCTCTGGTGCCGCTGGGATCAGGCGCGGGGCCTGGGGCACTTAG
TGCCAGCCTCCTGGGCAGCGTCCCCCATATGCGCCTGCGCTTGGAGAAGGCCCCGCCCCT
TCCCGAAGCCACGGGCGTTTGAGGGTTGGGCTCTCTCGTGGATGGAAAGGTAGAGCCCGC
CCAGGGGTTTGGGAGGGCAGACCAACACCCCCCCGCAAGAAGGACTCAGATTCCTTCCAC
ACCCGCCCCAGCGCTGGTGGCAGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGCTGGTTGCTCTAGGGAAGTACCCGGCCGTGTTCACGAAAGAGAACGTGCATCCTGCCA
CCCGAAGTAACTGTGGTGTCAGGAAAGCTCTAGAAGCACTGGGTCCTCCATCCGTCACAG
GTCATGGTCTCTGTTTCCACAGCTAAGGAGGCACACAAGCCCCCCGTGTTTCTGGAGAAG
CTGCAGAACACGGGTGTGGCCGACGGGTACCCGGTGCGCCTGGAGTGCCGGGTGGCGGGG
GCACCGCCACCACAGATCTTCTGGAAGAAGGAAAACGAATCGCTCACTCACAGCACCGAC
CGAGTGAGGTAAGAGCCCTCTGGTGCCGCTGGGATCAGGCGCGGGGCCTGGGGCACTTAG
TGCCAGCCTCCTGGGCAGCGTCCCCCATATGCGCCTGCGCTTGGAGAAGGCCCCGCCCCT
TCCCGAAGCCACGGGCGTTTGAGGGTTGGGCTCTCTCGTGGATGGAAAGGTAGAGCCCGC
CCAGGGGTTTGGGAGGGCAGACCAACACCCCCCCGCAAGAAGGACTCAGATTCCTTCCAC
ACCCGCCCCAGCGCTGGTGGCAGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
127-316, gnl|bosTau2|chr8 (788152-788341) |
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127-316, gnl|canFam2|chr25 (22533420-22533610) |
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127-316, gnl|danRer3|chr18 (599971-600169) |
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127-316, gnl|dasNov1|scaffold_6489 (4365-4176) |
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127-316, gnl|echTel1|scaffold_309054 (7013-7189) |
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127-316, gnl|fr1|chrUn (37686813-37686985) |
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127-316, gnl|galGal2|chr4 (25710175-25710360) |
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127-316, gnl|hg17|chr4 (170220118-170220309) |
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127-316, gnl|Hg17|chr4 (170220119-170220306) |
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127-316, gnl|loxAfr1|scaffold_10052 (10220-10030) |
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127-316, gnl|mm7|chr8 (59925278-59925087) |
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127-316, gnl|Mm7|chr8 (59925277-59925086) |
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127-316, gnl|monDom2|scaffold_9 (44989253-44989444) |
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127-316, gnl|oryCun1|scaffold_208125 (385999-386185) |
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127-316, gnl|panTro1|chr3 (187829449-187829640) |
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127-316, gnl|rheMac2|chr5 (161052869-161053060) |
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127-316, gnl|rn3|chr16 (31929933-31930124) |
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127-316, gnl|tetNig1|chr1_random (1770139-1769966) |
|
127-316, gnl|xenTro1|scaffold_25 (2856524-2856335) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
127-316, gnl|bosTau2|chr8 (788152-788341) |
|
127-316, gnl|canFam2|chr25 (22533420-22533610) |
|
127-316, gnl|danRer3|chr18 (599971-600169) |
|
127-316, gnl|dasNov1|scaffold_6489 (4365-4176) |
|
127-316, gnl|echTel1|scaffold_309054 (7013-7189) |
|
127-316, gnl|fr1|chrUn (37686813-37686985) |
|
127-316, gnl|galGal2|chr4 (25710175-25710360) |
|
127-316, gnl|hg17|chr4 (170220118-170220309) |
|
127-316, gnl|Hg17|chr4 (170220119-170220306) |
|
127-316, gnl|loxAfr1|scaffold_10052 (10220-10030) |
|
127-316, gnl|mm7|chr8 (59925278-59925087) |
|
127-316, gnl|Mm7|chr8 (59925277-59925086) |
|
127-316, gnl|monDom2|scaffold_9 (44989253-44989444) |
|
127-316, gnl|oryCun1|scaffold_208125 (385999-386185) |
|
127-316, gnl|panTro1|chr3 (187829449-187829640) |
|
127-316, gnl|rheMac2|chr5 (161052869-161053060) |
|
127-316, gnl|rn3|chr16 (31929933-31930124) |
|
127-316, gnl|tetNig1|chr1_random (1770139-1769966) |
|
127-316, gnl|xenTro1|scaffold_25 (2856524-2856335) |
