Non-Coding RNA Search

Ss1.1-Pig2-80K01.5

Sequence:


               
               GGGGGCACACCCCGGGCAGGCGGGGGTCCACAGCCCCCTTTCCGCACCTTCACGGCCAGC
GACTGGGCCCTCACCCACCTGGTGGTCCATGAGCAGACGGGTGAGGTGTATGTGGGTGCC
GTGAACCGCATCTACAAGCTGTCAGGGAATCTGACGCTGCTGCGTGCGCACGTGACAGGC
CCCGTGGAAGACAACGAGAAGTGCTACCCGCCGCCCAGCGTGCAGTCCTGCCCACACGGC
CTGGGCAGCACCGACAATGTCAACAAGCTGCTGCTGCTAGATCAGGCTGCCAACCGCCTG
CTGGCCTGCGGCAGTGCCTCACAGGGCATCTGCCAGTTCCTGAGGTTGGACGACCTCTTC
AAGCTGGGTGAGCCACACCACCGCAAGGAGCACTACCTGTCGGGTGTGCGCGAGCCGGGC
AGCATGGCAGGCGTGCTGATCGCCGGGCCGCCAGGCCAGGCGCAGGCCAAGCTCTTCGTG
GGCACGCCCATTGATGGCAAGTCTGAGTACTTCCCCACGCTGTCCAGCCGGCGGCTCATG
GCCAATGAGGAGGACGCCGAAATGTTCGGCTTCGTGTACCAGGACGAGTTCGTGTCCTCG
CAGCTCAAAATCCCCTCAGACACGCTGTCCAAGTTCCCAGCCTTCGACATCTACTACGTG
TATAGCTTCCGCAGCGAGCACTTCGTTTACTACCTCACCCTGCAGCTGGACACGCAGCTC
ACCTCGCCTGACGCTGCCGGCGAGCACTTCTTCACGTCCAAGATCGTGCGGCTGTGCGTG
GACGACCCCAAGTTCTACTCCTATGTCGAGTTCCCCATCGGCTGTGAGCAGGCAGGAGTG
GAGTACCGCCTGGTGCAGGATGCCTACCTGAGCCGGCCCGGTCGCGCCCTGGCCCGCCAG
CTGGGCCTGGCTGAGGATGAGGACGTGCTGTTCACCGTGTTCGCCCAGGGCCAGAAGAAC
CGTGTGAAGCCGCCCCGGGAGTCAGTCCTGTGCCTCTTCACACTCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGCACACCCCGGGCAGGCGGGGGTCCACAGCCCCCTTTCCGCACCTTCACGGCCAGC
GACTGGGCCCTCACCCACCTGGTGGTCCATGAGCAGACGGGTGAGGTGTATGTGGGTGCC
GTGAACCGCATCTACAAGCTGTCAGGGAATCTGACGCTGCTGCGTGCGCACGTGACAGGC
CCCGTGGAAGACAACGAGAAGTGCTACCCGCCGCCCAGCGTGCAGTCCTGCCCACACGGC
CTGGGCAGCACCGACAATGTCAACAAGCTGCTGCTGCTAGATCAGGCTGCCAACCGCCTG
CTGGCCTGCGGCAGTGCCTCACAGGGCATCTGCCAGTTCCTGAGGTTGGACGACCTCTTC
AAGCTGGGTGAGCCACACCACCGCAAGGAGCACTACCTGTCGGGTGTGCGCGAGCCGGGC
AGCATGGCAGGCGTGCTGATCGCCGGGCCGCCAGGCCAGGCGCAGGCCAAGCTCTTCGTG
GGCACGCCCATTGATGGCAAGTCTGAGTACTTCCCCACGCTGTCCAGCCGGCGGCTCATG
GCCAATGAGGAGGACGCCGAAATGTTCGGCTTCGTGTACCAGGACGAGTTCGTGTCCTCG
CAGCTCAAAATCCCCTCAGACACGCTGTCCAAGTTCCCAGCCTTCGACATCTACTACGTG
TATAGCTTCCGCAGCGAGCACTTCGTTTACTACCTCACCCTGCAGCTGGACACGCAGCTC
ACCTCGCCTGACGCTGCCGGCGAGCACTTCTTCACGTCCAAGATCGTGCGGCTGTGCGTG
GACGACCCCAAGTTCTACTCCTATGTCGAGTTCCCCATCGGCTGTGAGCAGGCAGGAGTG
GAGTACCGCCTGGTGCAGGATGCCTACCTGAGCCGGCCCGGTCGCGCCCTGGCCCGCCAG
CTGGGCCTGGCTGAGGATGAGGACGTGCTGTTCACCGTGTTCGCCCAGGGCCAGAAGAAC
CGTGTGAAGCCGCCCCGGGAGTCAGTCCTGTGCCTCTTCACACTCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61823990|ref|XP_590344.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61823990|ref|XP_590344.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               223-382, - strand, RNAz p=0.731146
               

               
               623-742, - strand, RNAz p=0.564727

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-382, - strand, RNAz p=0.731146
               

               
               623-742, - strand, RNAz p=0.564727

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr22 (46498082-46499089)
               

               
               1-1008, gnl|Hg17|chr3 (128190207-128191223)
               

               
               1-1008, gnl|Mm7|chr6 (89432681-89431656)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr22 (46498082-46499089)
               

               
               1-1008, gnl|Hg17|chr3 (128190207-128191223)
               

               
               1-1008, gnl|Mm7|chr6 (89432681-89431656)

	223-382, - strand, RNAz p=0.731146
	623-742, - strand, RNAz p=0.564727

	1-1008, gnl\|bosTau2\|chr22 (46498082-46499089)
	1-1008, gnl\|Hg17\|chr3 (128190207-128191223)
	1-1008, gnl\|Mm7\|chr6 (89432681-89431656)