Ss1.1-Pig2-80L03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGATCCTCTGTTTGATTTCTGGTGTGGCAACAAACCCAGGAGGTAAAGGTGCGTGGTAC CTGGAAGAGACGCCAGGGTCAGGGGGGTTCAGCCCCTGGATAAGGTGCTGCAAAGAGCGC ACGGGGCAAACCATCAAAGATGCAGGCAGCCATCCTCTCCCTGCTTCTCCTGGGTGCCCT GTCAGAGGGCCAGGCACTGCACCTAATCCACTTACCTGCTACAGGCAACGTGGCAGAGAA TTCGCCACCTGAGACTTCAGTGCACAAGTTTTCTGTGAAATTATCAGCCTCCTTGTCACC TGTGATGCCAGGGTTTCCCCTGATAATCAACTCAAGTCCCCTCACGGAAGCCTTCAGGGT GAACTGGCTCTCCGGCACTGACTTTGAGGTTGTCACCACTGGGAAGGAACAACTAGATTT CGAAACAGGACCACGCATATTTGATTTGCAGATTTACGTGAAGGATGATGTGGGTGTCAC TGACCTGCAGATCCTGACGGTCCAGGTAACGGATGTGAATGAGCCGCCTGAGTTTCAAGG CAACTTGGCAAAAGGTCTAGACCTCTCCATAGTGGAAGGAGCAAATCCTGGATTCCTTTA CCAGTTTGAGGCCTTCGATCCTGAAGACACAAGACAAAACATACCCCTCAGTTATTTCCT GATTCCGTCTTCAGAGAATTTCACAATGTCCAATAATGCGACCCTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGATCCTCTGTTTGATTTCTGGTGTGGCAACAAACCCAGGAGGTAAAGGTGCGTGGTAC CTGGAAGAGACGCCAGGGTCAGGGGGGTTCAGCCCCTGGATAAGGTGCTGCAAAGAGCGC ACGGGGCAAACCATCAAAGATGCAGGCAGCCATCCTCTCCCTGCTTCTCCTGGGTGCCCT GTCAGAGGGCCAGGCACTGCACCTAATCCACTTACCTGCTACAGGCAACGTGGCAGAGAA TTCGCCACCTGAGACTTCAGTGCACAAGTTTTCTGTGAAATTATCAGCCTCCTTGTCACC TGTGATGCCAGGGTTTCCCCTGATAATCAACTCAAGTCCCCTCACGGAAGCCTTCAGGGT GAACTGGCTCTCCGGCACTGACTTTGAGGTTGTCACCACTGGGAAGGAACAACTAGATTT CGAAACAGGACCACGCATATTTGATTTGCAGATTTACGTGAAGGATGATGTGGGTGTCAC TGACCTGCAGATCCTGACGGTCCAGGTAACGGATGTGAATGAGCCGCCTGAGTTTCAAGG CAACTTGGCAAAAGGTCTAGACCTCTCCATAGTGGAAGGAGCAAATCCTGGATTCCTTTA CCAGTTTGAGGCCTTCGATCCTGAAGACACAAGACAAAACATACCCCTCAGTTATTTCCT GATTCCGTCTTCAGAGAATTTCACAATGTCCAATAATGCGACCCTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 183-325, - strand, RNAz p=0.751523 | |
| 222-341, - strand, RNAz p=0.960008 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 183-325, - strand, RNAz p=0.751523 | |
| 222-341, - strand, RNAz p=0.960008 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 183-390, gnl|bosTau2|chr4 (23771937-23771730) | |
| 183-390, gnl|canFam2|chr18 (17476446-17476213) | |
| 183-390, gnl|dasNov1|scaffold_60349 (2149-1919) | |
| 183-390, gnl|echTel1|scaffold_241363 (4391-4173) | |
| 183-390, gnl|hg17|chr7 (105209228-105209460) | |
| 183-390, gnl|Hg17|chr7 (105209238-105209445) | |
| 183-390, gnl|loxAfr1|scaffold_7664 (2145-1914) | |
| 183-390, gnl|mm7|chr12 (30925783-30925551) | |
| 183-390, gnl|Mm7|chr12 (30925771-30925564) | |
| 183-390, gnl|monDom2|scaffold_30 (32262790-32263025) | |
| 183-390, gnl|oryCun1|scaffold_210006 (55028-55254) | |
| 183-390, gnl|panTro1|chr6 (107107507-107107739) | |
| 183-390, gnl|rheMac2|chr3 (143389541-143389773) | |
| 183-390, gnl|rn3|chr6 (51434358-51434129) | |
| 553-664, gnl|bosTau2|chr4 (23762219-23762105) | |
| 553-664, gnl|canFam2|chr18 (17468096-17467892) | |
| 553-664, gnl|hg17|chr7 (105218522-105218738) | |
| 553-664, gnl|Hg17|chr7 (105218587-105218700) | |
| 553-664, gnl|mm7|chr12 (30920053-30919857) | |
| 553-664, gnl|Mm7|chr12 (30919996-30919886) | |
| 553-664, gnl|monDom2|scaffold_30 (32267697-32267910) | |
| 553-664, gnl|panTro1|chr6 (107116706-107116922) | |
| 553-664, gnl|rheMac2|chr3 (143400574-143400790) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 183-390, gnl|bosTau2|chr4 (23771937-23771730) | |
| 183-390, gnl|canFam2|chr18 (17476446-17476213) | |
| 183-390, gnl|dasNov1|scaffold_60349 (2149-1919) | |
| 183-390, gnl|echTel1|scaffold_241363 (4391-4173) | |
| 183-390, gnl|hg17|chr7 (105209228-105209460) | |
| 183-390, gnl|Hg17|chr7 (105209238-105209445) | |
| 183-390, gnl|loxAfr1|scaffold_7664 (2145-1914) | |
| 183-390, gnl|mm7|chr12 (30925783-30925551) | |
| 183-390, gnl|Mm7|chr12 (30925771-30925564) | |
| 183-390, gnl|monDom2|scaffold_30 (32262790-32263025) | |
| 183-390, gnl|oryCun1|scaffold_210006 (55028-55254) | |
| 183-390, gnl|panTro1|chr6 (107107507-107107739) | |
| 183-390, gnl|rheMac2|chr3 (143389541-143389773) | |
| 183-390, gnl|rn3|chr6 (51434358-51434129) | |
| 553-664, gnl|bosTau2|chr4 (23762219-23762105) | |
| 553-664, gnl|canFam2|chr18 (17468096-17467892) | |
| 553-664, gnl|hg17|chr7 (105218522-105218738) | |
| 553-664, gnl|Hg17|chr7 (105218587-105218700) | |
| 553-664, gnl|mm7|chr12 (30920053-30919857) | |
| 553-664, gnl|Mm7|chr12 (30919996-30919886) | |
| 553-664, gnl|monDom2|scaffold_30 (32267697-32267910) | |
| 553-664, gnl|panTro1|chr6 (107116706-107116922) | |
| 553-664, gnl|rheMac2|chr3 (143400574-143400790) |