Non-Coding RNA Search

Ss1.1-Pig2-81E12.5

Sequence:


               
               CCGAGTGGAAGGTGCCTGTGGGAGGCTGGGCCTGCTGGCTGCAGGCCTGGACAGCTTGCC
AGCCGACTCACTTGGGCCCAGGGAGGGCCTGTGGGGTCACGTGGACCAGCTGAACCGCAC
GCTGACACAGCACGCCAAGGACATCGCCCGCCTCCGGGATGACCTGCTGGACTGCCAGGC
CCAGCTGGCCGAGCAGGTGCGGCCAGGGCAGGCCGACTAGGTGGGCTGGACAGGACCCAA
GCCCCAGGTCCTGCCAACCCTGGGGCCCTCCCCCAGAGCCCAGCCTTGCCCAGCAGGGCC
TCCCAGCCTCCCCTGGCCAGCGTGGATGCCACTGCCGAGGGCCCCGAAGGAAGTCTTGGT
CCAGCTCCACCCAACTGTCTAGGCACCAACATCCACACTCAATGCTGCACCAGCTGGACA
ATTCAAGATAGCGGTCAAGGCCAGTACTTCATGCCTGAAGGCTGAAGCGGGGGGGGCGAG
GGGCAGGCTCTTAGAGACCTCGTGATCCATAGTCTGCAAATTGCTTTTCTGCAGACACAA
CAGCCAGCACCCTTGCAAAGACCTTCAAATCCCTTCTCTGACAGCAGCCTTTGCCTGTGG
ACAAGAGCCCCAAGCCCATGGAGGGTTCCAGTTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGAGTGGAAGGTGCCTGTGGGAGGCTGGGCCTGCTGGCTGCAGGCCTGGACAGCTTGCC
AGCCGACTCACTTGGGCCCAGGGAGGGCCTGTGGGGTCACGTGGACCAGCTGAACCGCAC
GCTGACACAGCACGCCAAGGACATCGCCCGCCTCCGGGATGACCTGCTGGACTGCCAGGC
CCAGCTGGCCGAGCAGGTGCGGCCAGGGCAGGCCGACTAGGTGGGCTGGACAGGACCCAA
GCCCCAGGTCCTGCCAACCCTGGGGCCCTCCCCCAGAGCCCAGCCTTGCCCAGCAGGGCC
TCCCAGCCTCCCCTGGCCAGCGTGGATGCCACTGCCGAGGGCCCCGAAGGAAGTCTTGGT
CCAGCTCCACCCAACTGTCTAGGCACCAACATCCACACTCAATGCTGCACCAGCTGGACA
ATTCAAGATAGCGGTCAAGGCCAGTACTTCATGCCTGAAGGCTGAAGCGGGGGGGGCGAG
GGGCAGGCTCTTAGAGACCTCGTGATCCATAGTCTGCAAATTGCTTTTCTGCAGACACAA
CAGCCAGCACCCTTGCAAAGACCTTCAAATCCCTTCTCTGACAGCAGCCTTTGCCTGTGG
ACAAGAGCCCCAAGCCCATGGAGGGTTCCAGTTTCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-120, + strand, RNAz p=0.624114

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.624114

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_052846, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_052846, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-264, gnl|bosTau2|chr13 (51565822-51565556)
               

               
               1-264, gnl|Hg17|chr20 (39423541-39423278)
               

               
               1-264, gnl|Mm7|chr2 (160648657-160648396)
               


               
               273-462, gnl|bosTau2|chr13 (51565519-51565327)
               

               
               273-462, gnl|Hg17|chr20 (39423268-39423088)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-264, gnl|bosTau2|chr13 (51565822-51565556)
               

               
               1-264, gnl|Hg17|chr20 (39423541-39423278)
               

               
               1-264, gnl|Mm7|chr2 (160648657-160648396)
               


               
               273-462, gnl|bosTau2|chr13 (51565519-51565327)
               

               
               273-462, gnl|Hg17|chr20 (39423268-39423088)

	1-264, gnl\|bosTau2\|chr13 (51565822-51565556)
	1-264, gnl\|Hg17\|chr20 (39423541-39423278)
	1-264, gnl\|Mm7\|chr2 (160648657-160648396)

	273-462, gnl\|bosTau2\|chr13 (51565519-51565327)
	273-462, gnl\|Hg17\|chr20 (39423268-39423088)