Non-Coding RNA Search

Ss1.1-Pig2-81I17.5

Sequence:


               
               CCTCTCTCTGCCTCTGCTTGCCCCAAGCCCCGCCCCAACTTTTCTCTCCACACCCTAACC
CCAGGGGAAAGCAGTCAGCCTTGCCAAGCAGCCCACGCGACCTCTTGGAGCCATGGATCC
AAATCACTCCAACTTCCTGGAGCCCCAGCCCTCCCCAGAAGCCCTCAAGCCTACCCTGAA
CCCTAGCTCACTCGTGGTGAACAAGACCCAGCCGCAGGACCCCCCCAGCCTGGTGGGTGA
CAGGTTGCCCCCAAAGACCGGGGCGGTGGTCATCGACATGGGCACAGGCACCTGTAAGGT
GGGCTTCTCCGGGCAGGCCCGGCCCACCTACACCGTGGCCACCATCGTCGGCTGCCAGCC
CAAGAAGCCGGCCAGCAATGGGCAGCCGGTGCTGGAGACGTTCATCGGGGAGGCAGCCCG
CACGCGCCCCGAGCTGACGCTGGTGCAGCCTGTGCGGAACGGCATCGTGGTGGACTGGGA
CGCAGCCGAGCTCATATGGCGCCACATGCTGGAGCACGACCTCCGCGTGGCCACCCGCGA
CCACCCACTGCTCTTCTCTGACCCTCCCTTCAGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTCTCTGCCTCTGCTTGCCCCAAGCCCCGCCCCAACTTTTCTCTCCACACCCTAACC
CCAGGGGAAAGCAGTCAGCCTTGCCAAGCAGCCCACGCGACCTCTTGGAGCCATGGATCC
AAATCACTCCAACTTCCTGGAGCCCCAGCCCTCCCCAGAAGCCCTCAAGCCTACCCTGAA
CCCTAGCTCACTCGTGGTGAACAAGACCCAGCCGCAGGACCCCCCCAGCCTGGTGGGTGA
CAGGTTGCCCCCAAAGACCGGGGCGGTGGTCATCGACATGGGCACAGGCACCTGTAAGGT
GGGCTTCTCCGGGCAGGCCCGGCCCACCTACACCGTGGCCACCATCGTCGGCTGCCAGCC
CAAGAAGCCGGCCAGCAATGGGCAGCCGGTGCTGGAGACGTTCATCGGGGAGGCAGCCCG
CACGCGCCCCGAGCTGACGCTGGTGCAGCCTGTGCGGAACGGCATCGTGGTGGACTGGGA
CGCAGCCGAGCTCATATGGCGCCACATGCTGGAGCACGACCTCCGCGTGGCCACCCGCGA
CCACCCACTGCTCTTCTCTGACCCTCCCTTCAGCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55648175|ref|XP_524089.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55648175|ref|XP_524089.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               231-430, + strand, RNAz p=0.935362

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-430, + strand, RNAz p=0.935362

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr7 (14384099-14383519)
               

               
               1-576, gnl|Hg17|chr19 (8670150-8669588)
               

               
               1-576, gnl|Mm7|chr17 (31503972-31504533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr7 (14384099-14383519)
               

               
               1-576, gnl|Hg17|chr19 (8670150-8669588)
               

               
               1-576, gnl|Mm7|chr17 (31503972-31504533)

	1-576, gnl\|bosTau2\|chr7 (14384099-14383519)
	1-576, gnl\|Hg17\|chr19 (8670150-8669588)
	1-576, gnl\|Mm7\|chr17 (31503972-31504533)