Non-Coding RNA Search

Ss1.1-Pig2-81J12.5

Sequence:


               
               GTAGAGGTGCCTGGGGTCACATAGGCAAGTTGCAGTGTCAGACCCAGAGAGCCACTTGCA
TCTCAACCACACAGATCAACTTCCACTCCTAACCCCATTTCCTAGAGAAAGGTAAGGGAT
CGTCCCAAAAGCCTCTGAGCAGCAGATCAGCACTTGTTACCTTCTGTGCAGTGCTCTAGG
GAATAGGGAAGGCACAGCCCCATCTTCTGTGGAGGAAACATCTTCCCTGCTTCCCAGTCT
GCTTGGGCCTAGGTGGCACAGCTGTTAGTGGAGCATCGGATTCCAGAACCTTGTGGAAGA
GGCTAGAGTTGGATGGGGGGCCTCTTAGGGGTCCTCTCCAGCCTAAGGACTCCTATCCCA
AGTCCCTGCCTTGGCCATGGAACTCGATCCAAGGAACTTTGTTTCTCTGCTTCTTTGAAG
AAAAGCAACAAGGACAGGCTGGGTGGGGCAGGTCTGGAGTGAAGGGTGGTGCTTGAGTCC
TACTCTAGCTTCTAGTAGTTGCAGCTGTGCTCTCTTTGAAGCCCAAGGCTTCTAGGGCAC
TGGGACCAGCCTTTTGCAGAGAGTCTGAATGGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAGAGGTGCCTGGGGTCACATAGGCAAGTTGCAGTGTCAGACCCAGAGAGCCACTTGCA
TCTCAACCACACAGATCAACTTCCACTCCTAACCCCATTTCCTAGAGAAAGGTAAGGGAT
CGTCCCAAAAGCCTCTGAGCAGCAGATCAGCACTTGTTACCTTCTGTGCAGTGCTCTAGG
GAATAGGGAAGGCACAGCCCCATCTTCTGTGGAGGAAACATCTTCCCTGCTTCCCAGTCT
GCTTGGGCCTAGGTGGCACAGCTGTTAGTGGAGCATCGGATTCCAGAACCTTGTGGAAGA
GGCTAGAGTTGGATGGGGGGCCTCTTAGGGGTCCTCTCCAGCCTAAGGACTCCTATCCCA
AGTCCCTGCCTTGGCCATGGAACTCGATCCAAGGAACTTTGTTTCTCTGCTTCTTTGAAG
AAAAGCAACAAGGACAGGCTGGGTGGGGCAGGTCTGGAGTGAAGGGTGGTGCTTGAGTCC
TACTCTAGCTTCTAGTAGTTGCAGCTGTGCTCTCTTTGAAGCCCAAGGCTTCTAGGGCAC
TGGGACCAGCCTTTTGCAGAGAGTCTGAATGGGCAT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               80-198, - strand, RNAz p=0.999174
               

               
               88-459, - strand, RNAz p=0.999018
               

               
               279-435, - strand, RNAz p=0.931207

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-198, - strand, RNAz p=0.999174
               

               
               88-459, - strand, RNAz p=0.999018
               

               
               279-435, - strand, RNAz p=0.931207

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               272-389, + strand, RNAmicro p=0.998124

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               272-389, + strand, RNAmicro p=0.998124

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-486, gnl|bosTau2|chr22 (41217041-41217510)
               

               
               1-486, gnl|canFam2|chr20 (45055598-45054562)
               

               
               1-486, gnl|echTel1|scaffold_231462 (3724-4573)
               

               
               1-486, gnl|hg17|chr3 (46723549-46724495)
               

               
               1-486, gnl|Hg17|chr3 (46723775-46724237)
               

               
               1-486, gnl|loxAfr1|scaffold_24408 (20452-21435)
               

               
               1-486, gnl|mm7|chr9 (110567317-110566416)
               

               
               1-486, gnl|Mm7|chr9 (110567059-110566622)
               

               
               1-486, gnl|oryCun1|scaffold_204945 (2963-3843)
               

               
               1-486, gnl|panTro1|chr2 (48163446-48164392)
               

               
               1-486, gnl|rheMac2|chr2 (89815796-89814838)
               

               
               1-486, gnl|rn3|chr8 (115277528-115276613)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-486, gnl|bosTau2|chr22 (41217041-41217510)
               

               
               1-486, gnl|canFam2|chr20 (45055598-45054562)
               

               
               1-486, gnl|echTel1|scaffold_231462 (3724-4573)
               

               
               1-486, gnl|hg17|chr3 (46723549-46724495)
               

               
               1-486, gnl|Hg17|chr3 (46723775-46724237)
               

               
               1-486, gnl|loxAfr1|scaffold_24408 (20452-21435)
               

               
               1-486, gnl|mm7|chr9 (110567317-110566416)
               

               
               1-486, gnl|Mm7|chr9 (110567059-110566622)
               

               
               1-486, gnl|oryCun1|scaffold_204945 (2963-3843)
               

               
               1-486, gnl|panTro1|chr2 (48163446-48164392)
               

               
               1-486, gnl|rheMac2|chr2 (89815796-89814838)
               

               
               1-486, gnl|rn3|chr8 (115277528-115276613)

	80-198, - strand, RNAz p=0.999174
	88-459, - strand, RNAz p=0.999018
	279-435, - strand, RNAz p=0.931207

	1-486, gnl\|bosTau2\|chr22 (41217041-41217510)
	1-486, gnl\|canFam2\|chr20 (45055598-45054562)
	1-486, gnl\|echTel1\|scaffold_231462 (3724-4573)
	1-486, gnl\|hg17\|chr3 (46723549-46724495)
	1-486, gnl\|Hg17\|chr3 (46723775-46724237)
	1-486, gnl\|loxAfr1\|scaffold_24408 (20452-21435)
	1-486, gnl\|mm7\|chr9 (110567317-110566416)
	1-486, gnl\|Mm7\|chr9 (110567059-110566622)
	1-486, gnl\|oryCun1\|scaffold_204945 (2963-3843)
	1-486, gnl\|panTro1\|chr2 (48163446-48164392)
	1-486, gnl\|rheMac2\|chr2 (89815796-89814838)
	1-486, gnl\|rn3\|chr8 (115277528-115276613)