Non-Coding RNA Search

Ss1.1-Pig2-82F04.5

Sequence:


               
               CTTTCTATGGTAGCAGATCTCAGATATCCTGTGGACCAATCACAGCTTGTGCCTCAGGTC
ATCCACATGTGTCTGTCCATCACTGCGAAACTGACTGTGTCCATGGGATGATGCCCTTTG
TCCCATCGTTTGGAGGAGAAAGTCAATCATTGGGAACTAGTACAACTCGTCACTGCAATT
CTGCCGTTATTCCACGCTTGATCTCTATCGCTTTATTTTAATGTCGAAAGCCCTTTAGGG
CTTATGAAAAATACTTGGGGATTATTTCCTGAAAGGTCTAAGGAAGCAGTAGTTGAACCA
TGCAATGATGTAGAGTTTCTTTTTTGTAAAATCATCAATTCTTTGGTACTCAGGAGGTTT
CTATAAAGCAACGTAGATAGGGACCAATTGCATGAGTAATTATTGCAATTGGATTTCAAT
TTCCTTTTTGTGCCTTGACACCCTTCTTTATATGCTCTTTCAAAAAAAAAAAAAAAAAAA
------------------------------------------------------------
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AAAGCAAAAAAAATTAAAAAAAATTAAAAAATCTCTTAATTTAGGAATTAATCCTTACTC
TTTAAAGGAACTGTGCATAAAACAGCAACTCTTTCTCATTCTTCACATACCCTTAATATT
TTTCCTCCTTGAACTGGCAGCAGCCCACACTTGCAGGGATCTCAAGGAGTCTTCATGTGT
GAAACGCTATTAAGTCGTGAGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCTATGGTAGCAGATCTCAGATATCCTGTGGACCAATCACAGCTTGTGCCTCAGGTC
ATCCACATGTGTCTGTCCATCACTGCGAAACTGACTGTGTCCATGGGATGATGCCCTTTG
TCCCATCGTTTGGAGGAGAAAGTCAATCATTGGGAACTAGTACAACTCGTCACTGCAATT
CTGCCGTTATTCCACGCTTGATCTCTATCGCTTTATTTTAATGTCGAAAGCCCTTTAGGG
CTTATGAAAAATACTTGGGGATTATTTCCTGAAAGGTCTAAGGAAGCAGTAGTTGAACCA
TGCAATGATGTAGAGTTTCTTTTTTGTAAAATCATCAATTCTTTGGTACTCAGGAGGTTT
CTATAAAGCAACGTAGATAGGGACCAATTGCATGAGTAATTATTGCAATTGGATTTCAAT
TTCCTTTTTGTGCCTTGACACCCTTCTTTATATGCTCTTTCAAAAAAAAAAAAAAAAAAA
------------------------------------------------------------
------------------------------------------------------------
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AAAGCAAAAAAAATTAAAAAAAATTAAAAAATCTCTTAATTTAGGAATTAATCCTTACTC
TTTAAAGGAACTGTGCATAAAACAGCAACTCTTTCTCATTCTTCACATACCCTTAATATT
TTTCCTCCTTGAACTGGCAGCAGCCCACACTTGCAGGGATCTCAAGGAGTCTTCATGTGT
GAAACGCTATTAAGTCGTGAGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               342-460, + strand, RNAz p=0.979348

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               342-460, + strand, RNAz p=0.979348

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK126736, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK126736, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               24-467, gnl|bosTau2|chr1 (41215561-41216000)
               

               
               24-467, gnl|Hg17|chr3 (120694240-120694692)
               

               
               24-467, gnl|Mm7|chr16 (38234028-38233628)
               


               
               518-683, gnl|bosTau2|chr1 (41216024-41216189)
               

               
               518-683, gnl|Hg17|chr3 (120694716-120694880)
               

               
               518-683, gnl|Mm7|chr16 (38233605-38233357)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-467, gnl|bosTau2|chr1 (41215561-41216000)
               

               
               24-467, gnl|Hg17|chr3 (120694240-120694692)
               

               
               24-467, gnl|Mm7|chr16 (38234028-38233628)
               


               
               518-683, gnl|bosTau2|chr1 (41216024-41216189)
               

               
               518-683, gnl|Hg17|chr3 (120694716-120694880)
               

               
               518-683, gnl|Mm7|chr16 (38233605-38233357)

	24-467, gnl\|bosTau2\|chr1 (41215561-41216000)
	24-467, gnl\|Hg17\|chr3 (120694240-120694692)
	24-467, gnl\|Mm7\|chr16 (38234028-38233628)

	518-683, gnl\|bosTau2\|chr1 (41216024-41216189)
	518-683, gnl\|Hg17\|chr3 (120694716-120694880)
	518-683, gnl\|Mm7\|chr16 (38233605-38233357)