Non-Coding RNA Search

Ss1.1-Pig2-83C16.5

Sequence:


               
               GCCTGCTTCCTCAGCAGCAGATTGGCAAGGGCTGGGCGTGTGTCCCAGCTCCCACTCCCT
CCTGGCCTTCCCCCTGCTCTCCTCTGCTCAAGTCCACTTCTAATCTGGGTCCCAGAGCTG
GGCTGGCCCCTTTCTTGGACTCAGGAAGCAGCCTCAGCCCATGGGCATCTGCACTGTTGC
CACGGGTGGCTGCCTTTCTTGGCTGAGCAGCTGAACCAAGATGTCACCAGGGCAAGGAAG
CAGTCACTGTGTGCCCACCACTCTGCCAGGCCCTGTCACCGCTATTTCTTGTTTCAAGCT
CATGGTCATCCTGCAGACGACAGAGTATCACTCGACTTTTTCAGGCAAGGGAAAGAGACA
GAGGCTCAGAGAAGCCAGGTGATTTGTCCAAGGTCACACAGCCTTTCTCGGGACCTGAAA
CACGATCTGTTCCTCCTTCTCCAGGCGGAATCCTAGCCCAGGCAGCCGAGGGGTCGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGCTTCCTCAGCAGCAGATTGGCAAGGGCTGGGCGTGTGTCCCAGCTCCCACTCCCT
CCTGGCCTTCCCCCTGCTCTCCTCTGCTCAAGTCCACTTCTAATCTGGGTCCCAGAGCTG
GGCTGGCCCCTTTCTTGGACTCAGGAAGCAGCCTCAGCCCATGGGCATCTGCACTGTTGC
CACGGGTGGCTGCCTTTCTTGGCTGAGCAGCTGAACCAAGATGTCACCAGGGCAAGGAAG
CAGTCACTGTGTGCCCACCACTCTGCCAGGCCCTGTCACCGCTATTTCTTGTTTCAAGCT
CATGGTCATCCTGCAGACGACAGAGTATCACTCGACTTTTTCAGGCAAGGGAAAGAGACA
GAGGCTCAGAGAAGCCAGGTGATTTGTCCAAGGTCACACAGCCTTTCTCGGGACCTGAAA
CACGATCTGTTCCTCCTTCTCCAGGCGGAATCCTAGCCCAGGCAGCCGAGGGGTCGAAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-200, - strand, RNAz p=0.971717

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-200, - strand, RNAz p=0.971717

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               139-219, + strand, RNAmicro p=0.971251

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               139-219, + strand, RNAmicro p=0.971251

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-221, gnl|bosTau2|chr29 (34154280-34154061)
               

               
               1-221, gnl|Hg17|chr11 (64513279-64512962)
               


               
               352-473, gnl|bosTau2|chr29 (34154055-34153931)
               

               
               352-473, gnl|canFam2|chr18 (55220849-55220171)
               

               
               352-473, gnl|hg17|chr11 (64512386-64513078)
               

               
               352-473, gnl|Hg17|chr11 (64512932-64512814)
               

               
               352-473, gnl|oryCun1|scaffold_176286 (40223-40694)
               

               
               352-473, gnl|panTro1|chr9 (65750131-65750823)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr29 (34154280-34154061)
               

               
               1-221, gnl|Hg17|chr11 (64513279-64512962)
               


               
               352-473, gnl|bosTau2|chr29 (34154055-34153931)
               

               
               352-473, gnl|canFam2|chr18 (55220849-55220171)
               

               
               352-473, gnl|hg17|chr11 (64512386-64513078)
               

               
               352-473, gnl|Hg17|chr11 (64512932-64512814)
               

               
               352-473, gnl|oryCun1|scaffold_176286 (40223-40694)
               

               
               352-473, gnl|panTro1|chr9 (65750131-65750823)

	1-221, gnl\|bosTau2\|chr29 (34154280-34154061)
	1-221, gnl\|Hg17\|chr11 (64513279-64512962)

	352-473, gnl\|bosTau2\|chr29 (34154055-34153931)
	352-473, gnl\|canFam2\|chr18 (55220849-55220171)
	352-473, gnl\|hg17\|chr11 (64512386-64513078)
	352-473, gnl\|Hg17\|chr11 (64512932-64512814)
	352-473, gnl\|oryCun1\|scaffold_176286 (40223-40694)
	352-473, gnl\|panTro1\|chr9 (65750131-65750823)