Non-Coding RNA Search

Ss1.1-Pig2-83N11.5

Sequence:


               
               GTTGGCAACAAGCTTTGGCTTTTTTCGATTTGGCTAAAGTGGTGCTTCTTTCTTAAGCTC
TGAGGAAGCCCTGGGGGGACCCCAACCTCATCCTCTTAGACAAGTCTCTTGCTCCCTTTC
TTCCACTCTTCTGCGTTCCTTATACTCTTCTCTCTTTCCCTGACCTCCTTTAGTTTATTT
TTTTATGTTCACTCAGCTTGCTTGCTGGCCTGCCTGCCTGTCTGCCTATGTGATGATGAA
TTCTCTGCATGGCTACAGTGATCCTGCTGTTAGCTGGCAAGGTCAGGGTTAGCTCCTTGG
CTGCAGAAGACCAAGAATCTGCATCCTAAACCCAATGATGTCCTCCCTGGGCTGGACTGC
TTTCAAACTTACATGAAGGCATAGCAGAAGGCCTGCCCAACTGGCATGAAATCAGAAGGG
CTTCTGGCAACTTCCATACCTATCCATTCTTTGGAGTTGGTTTCTCTTATTGCTTTTTCT
TGATCTGGTTTCATTTATTTACCTGGGGCCTTCCTTTTCTGAGGATGTTCTAGAATCAAT
CTACTTGGTTATCCACGGTTAAAGGGTTAAGGGATAGACATGGGGGAAGAAGGACAGAGA
TGGGAAGAGAATGGAGAGAATATGGCTAAAATCTGGGAAAGGAGAGCACTGTTCATTGAT
CACTTTTCCAGTCCAGCCTGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGGCAACAAGCTTTGGCTTTTTTCGATTTGGCTAAAGTGGTGCTTCTTTCTTAAGCTC
TGAGGAAGCCCTGGGGGGACCCCAACCTCATCCTCTTAGACAAGTCTCTTGCTCCCTTTC
TTCCACTCTTCTGCGTTCCTTATACTCTTCTCTCTTTCCCTGACCTCCTTTAGTTTATTT
TTTTATGTTCACTCAGCTTGCTTGCTGGCCTGCCTGCCTGTCTGCCTATGTGATGATGAA
TTCTCTGCATGGCTACAGTGATCCTGCTGTTAGCTGGCAAGGTCAGGGTTAGCTCCTTGG
CTGCAGAAGACCAAGAATCTGCATCCTAAACCCAATGATGTCCTCCCTGGGCTGGACTGC
TTTCAAACTTACATGAAGGCATAGCAGAAGGCCTGCCCAACTGGCATGAAATCAGAAGGG
CTTCTGGCAACTTCCATACCTATCCATTCTTTGGAGTTGGTTTCTCTTATTGCTTTTTCT
TGATCTGGTTTCATTTATTTACCTGGGGCCTTCCTTTTCTGAGGATGTTCTAGAATCAAT
CTACTTGGTTATCCACGGTTAAAGGGTTAAGGGATAGACATGGGGGAAGAAGGACAGAGA
TGGGAAGAGAATGGAGAGAATATGGCTAAAATCTGGGAAAGGAGAGCACTGTTCATTGAT
CACTTTTCCAGTCCAGCCTGAATC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-158, - strand, RNAz p=0.996553
               

               
               199-294, - strand, RNAz p=0.986179
               

               
               495-612, - strand, RNAz p=0.723543

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-158, - strand, RNAz p=0.996553
               

               
               199-294, - strand, RNAz p=0.986179
               

               
               495-612, - strand, RNAz p=0.723543

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               2-158, DKFZp459F0420_r1 459 (synonym (emb|CR533174.1|), blast 
E-value=0.0000000000002, identity=82.28% 
               

               
               1-158, LB01318.CR_P01 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV801780.1|), 
blast E-value=3e-30, identity=86.71% 
               

               
               1-158, LB01714.CR_I18 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV814780.1|), 
blast E-value=3e-30, identity=86.71% 
               

               
               1-141, 001025BEMN033953HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY204926.1|), 
blast E-value=1e-29, identity=87.94% 
               

               
               1-158, sh3P0039I24_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY517987.1|), blast E-value=2e-25, identity=85.44% 
               

               
               41-158, LB02939.CR_O13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351665.1|), 
blast E-value=3e-18, identity=85.59%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               2-158, DKFZp459F0420_r1 459 (synonym (emb|CR533174.1|), blast 
E-value=0.0000000000002, identity=82.28% 
               

               
               1-158, LB01318.CR_P01 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb|DV801780.1|), 
blast E-value=3e-30, identity=86.71% 
               

               
               1-158, LB01714.CR_I18 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb|DV814780.1|), 
blast E-value=3e-30, identity=86.71% 
               

               
               1-141, 001025BEMN033953HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY204926.1|), 
blast E-value=1e-29, identity=87.94% 
               

               
               1-158, sh3P0039I24_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, 
(gb|DY517987.1|), blast E-value=2e-25, identity=85.44% 
               

               
               41-158, LB02939.CR_O13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351665.1|), 
blast E-value=3e-18, identity=85.59%

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-684, gnl|bosTau2|chr3 (76956328-76955655)
               

               
               1-684, gnl|Hg17|chr1 (36057083-36057786)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-684, gnl|bosTau2|chr3 (76956328-76955655)
               

               
               1-684, gnl|Hg17|chr1 (36057083-36057786)

	1-158, - strand, RNAz p=0.996553
	199-294, - strand, RNAz p=0.986179
	495-612, - strand, RNAz p=0.723543

	2-158, DKFZp459F0420_r1 459 (synonym (emb\|CR533174.1\|), blast E-value=0.0000000000002, identity=82.28%
	1-158, LB01318.CR_P01 GC_BGC-13 Bos taurus cDNA clone IMAGE (gb\|DV801780.1\|), blast E-value=3e-30, identity=86.71%
	1-158, LB01714.CR_I18 GC_BGC-17 Bos taurus cDNA clone IMAGE (gb\|DV814780.1\|), blast E-value=3e-30, identity=86.71%
	1-141, 001025BEMN033953HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY204926.1\|), blast E-value=1e-29, identity=87.94%
	1-158, sh3P0039I24_F.ab1 adult sheep fracture callus 10d Ovis aries cDNA, (gb\|DY517987.1\|), blast E-value=2e-25, identity=85.44%
	41-158, LB02939.CR_O13 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE351665.1\|), blast E-value=3e-18, identity=85.59%

	1-684, gnl\|bosTau2\|chr3 (76956328-76955655)
	1-684, gnl\|Hg17\|chr1 (36057083-36057786)