Non-Coding RNA Search

Ss1.1-Pig2-83N14.5

Sequence:


               
               ACAGACAGGGGAGCTGGACAGAAGGGGTCAGGTTTCTTGAAGCAGCTGGAAGTCCTGGAA
GTCTGGTTCCCACCTGGAGAGTCTCTTCCCATAGGAGATGCGCACCCAGGCACCGGAGGG
CGGAGCCCAACATCCTCGTACCCACCAATCAATCTGTCCCTTCTCTGGTTCAAGCGCATC
TGGAAGAATCAAGGCAGCTGATTCTCTGCAACATTCCAGGACAGAAAGCTGCCAGTCACC
ACTCCCCCCATCCCTGTGAAGAGACTCACTTCTAACAGACCCTGCTGGGCAGAATCCCCA
CCATGCAAGGCAGGCTCAGTCTCCCCACGCTCTGCCACTTCCTTCTCCCTTGGGCCTTCA
CCACCCTCCACAGAACCCTGGGGGACCCAGCATCCCACCCTGGCCCCCACTACCTCCTGC
CTCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGCCACGACCACGCTGCCCTGCGTCC
TGTGCGCCCCGCCTCCCAGCTACAAGGTCCGCTGGAGCAAAGTGGAGCCGGGGGAACTCC
GGGAGACGCCGATCCTCATCACCAACGGACTGCAAGCCCGCGGCTACGGGCCCCTGGGGG
GGCGTGCCCGGATGCGAAGAGGGCACCCGCTGGACGCCTCCCTGGTAATCGCCGGCGTGC
GCCTGGAGGACGAGGGCCGGTACCGCTGTGAGCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGACAGGGGAGCTGGACAGAAGGGGTCAGGTTTCTTGAAGCAGCTGGAAGTCCTGGAA
GTCTGGTTCCCACCTGGAGAGTCTCTTCCCATAGGAGATGCGCACCCAGGCACCGGAGGG
CGGAGCCCAACATCCTCGTACCCACCAATCAATCTGTCCCTTCTCTGGTTCAAGCGCATC
TGGAAGAATCAAGGCAGCTGATTCTCTGCAACATTCCAGGACAGAAAGCTGCCAGTCACC
ACTCCCCCCATCCCTGTGAAGAGACTCACTTCTAACAGACCCTGCTGGGCAGAATCCCCA
CCATGCAAGGCAGGCTCAGTCTCCCCACGCTCTGCCACTTCCTTCTCCCTTGGGCCTTCA
CCACCCTCCACAGAACCCTGGGGGACCCAGCATCCCACCCTGGCCCCCACTACCTCCTGC
CTCCCATCCACGAGGTCATTCACTCTCGTCGTGGGGCCACGACCACGCTGCCCTGCGTCC
TGTGCGCCCCGCCTCCCAGCTACAAGGTCCGCTGGAGCAAAGTGGAGCCGGGGGAACTCC
GGGAGACGCCGATCCTCATCACCAACGGACTGCAAGCCCGCGGCTACGGGCCCCTGGGGG
GGCGTGCCCGGATGCGAAGAGGGCACCCGCTGGACGCCTCCCTGGTAATCGCCGGCGTGC
GCCTGGAGGACGAGGGCCGGTACCGCTGTGAGCTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55959665|emb|CAI13054.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55959665|emb|CAI13054.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               388-506, - strand, RNAz p=0.743563

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               388-506, - strand, RNAz p=0.743563

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-125, gnl|bosTau2|chr3 (10962694-10962819)
               

               
               1-125, gnl|Hg17|chr1 (153402282-153402400)
               

               
               1-125, gnl|Mm7|chr3 (88141292-88141186)
               


               
               388-696, gnl|bosTau2|chr3 (10965943-10966251)
               

               
               388-696, gnl|Hg17|chr1 (153406669-153406977)
               

               
               388-696, gnl|Mm7|chr3 (88137922-88137614)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-125, gnl|bosTau2|chr3 (10962694-10962819)
               

               
               1-125, gnl|Hg17|chr1 (153402282-153402400)
               

               
               1-125, gnl|Mm7|chr3 (88141292-88141186)
               


               
               388-696, gnl|bosTau2|chr3 (10965943-10966251)
               

               
               388-696, gnl|Hg17|chr1 (153406669-153406977)
               

               
               388-696, gnl|Mm7|chr3 (88137922-88137614)

	1-125, gnl\|bosTau2\|chr3 (10962694-10962819)
	1-125, gnl\|Hg17\|chr1 (153402282-153402400)
	1-125, gnl\|Mm7\|chr3 (88141292-88141186)

	388-696, gnl\|bosTau2\|chr3 (10965943-10966251)
	388-696, gnl\|Hg17\|chr1 (153406669-153406977)
	388-696, gnl\|Mm7\|chr3 (88137922-88137614)