Non-Coding RNA Search

Ss1.1-Pig2-85B20.5

Sequence:


               
               AGAGCAGATCTTGAGGTTCTCGTCCTAGCCACCTGGAGGCTGCACAGAGGGAGGCAGCAG
GGGCTTCGGGCCTGGGGGGTGTTGGGGAGGGGCGTGGAGCACACTCTGAGCACTCGTAAG
TTCAGGGTTTGCTCTGCAGGGGGTGCTTCCCCTTTGTTTCACCTCCCTCCAGCTCCCCTC
CCCTGCACTAAGCAATCAGCAGATGCCCTGAAAGCTGGAGTGTCCTGGGTGCCGGGTGGC
ACTGATGGAGCTTTGTTCTGTAACCCCTAGGTCCCAGAGATGGCCTAGTGATGCAAGCGC
CTTCCAATGACTGATGATTGGAGCACCTTCTCCGAGGGTGCCTGCCTGGGCCTGTGCTGT
CGCATTGAACCAAAGGAACTTGTCCACCACTTCCCCACAGACGTCCTTCTCTCCTAATTC
ATGAGCCAGCAGGATGCGGTCGCCGCGCTTTCAGAACGCCTTCTCATAGCTGCGTACAAA
GGCCAGGCAGAGAATGTGGTTCAGCTCATCAACAAGGGCGCCAAGGTAGCGGTTACCAAG
CATGGCCGGACCGCCCTGCATCTCGCTGCCAATAAGGGCCATCTCTCTGTGGTCCAGATC
TTGCTGAAGGCTGGCTGTGACCTTGATGTCCAGGATGATGGGGATCAGACCGCCTTGCAC
CGGGCCACGGTGGTGGGGAATACCGAGGTCATCGCGGCACTCATCCAGGAGGGCTGTGCT
CTGGACCGGCAGGACAAGGATGGGAACACAGCCCTGCACGAAGCATCCTGGCATGGTTTC
AGCCAGTCAGCCAAGCTACTCGTTAAAGCAGGAGCCAATGTGCTTGCCAAGAACAAGGCT
GGGAACACGGCTCTGCACCTGGCCTGCCAGAACAGCCATGCCCAGAGCACACGCGTCCTC
CTGCTGGGCGGGTCCCGCGCCGACCTCAAAAACAACGCAGGCGACACCTGTTTGCACGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCAGATCTTGAGGTTCTCGTCCTAGCCACCTGGAGGCTGCACAGAGGGAGGCAGCAG
GGGCTTCGGGCCTGGGGGGTGTTGGGGAGGGGCGTGGAGCACACTCTGAGCACTCGTAAG
TTCAGGGTTTGCTCTGCAGGGGGTGCTTCCCCTTTGTTTCACCTCCCTCCAGCTCCCCTC
CCCTGCACTAAGCAATCAGCAGATGCCCTGAAAGCTGGAGTGTCCTGGGTGCCGGGTGGC
ACTGATGGAGCTTTGTTCTGTAACCCCTAGGTCCCAGAGATGGCCTAGTGATGCAAGCGC
CTTCCAATGACTGATGATTGGAGCACCTTCTCCGAGGGTGCCTGCCTGGGCCTGTGCTGT
CGCATTGAACCAAAGGAACTTGTCCACCACTTCCCCACAGACGTCCTTCTCTCCTAATTC
ATGAGCCAGCAGGATGCGGTCGCCGCGCTTTCAGAACGCCTTCTCATAGCTGCGTACAAA
GGCCAGGCAGAGAATGTGGTTCAGCTCATCAACAAGGGCGCCAAGGTAGCGGTTACCAAG
CATGGCCGGACCGCCCTGCATCTCGCTGCCAATAAGGGCCATCTCTCTGTGGTCCAGATC
TTGCTGAAGGCTGGCTGTGACCTTGATGTCCAGGATGATGGGGATCAGACCGCCTTGCAC
CGGGCCACGGTGGTGGGGAATACCGAGGTCATCGCGGCACTCATCCAGGAGGGCTGTGCT
CTGGACCGGCAGGACAAGGATGGGAACACAGCCCTGCACGAAGCATCCTGGCATGGTTTC
AGCCAGTCAGCCAAGCTACTCGTTAAAGCAGGAGCCAATGTGCTTGCCAAGAACAAGGCT
GGGAACACGGCTCTGCACCTGGCCTGCCAGAACAGCCATGCCCAGAGCACACGCGTCCTC
CTGCTGGGCGGGTCCCGCGCCGACCTCAAAAACAACGCAGGCGACACCTGTTTGCACGTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|9280255|dbj|BAB01671.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|9280255|dbj|BAB01671.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               94-201, + strand, RNAz p=0.540602

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               94-201, + strand, RNAz p=0.540602

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               55-540, gnl|bosTau2|chr9 (33979419-33978920)
               

               
               55-540, gnl|Hg17|chr6 (90333032-90333534)
               


               
               836-944, gnl|bosTau2|chr9 (33403009-33402901)
               

               
               836-944, gnl|canFam2|chr12 (51818208-51818338)
               

               
               836-944, gnl|danRer3|chr20 (1622207-1622077)
               

               
               836-944, gnl|dasNov1|scaffold_10103 (48955-49084)
               

               
               836-944, gnl|echTel1|scaffold_224759 (3986-3856)
               

               
               836-944, gnl|fr1|chrUn (312499673-312499550)
               

               
               836-944, gnl|galGal2|chr3 (73899233-73899109)
               

               
               836-944, gnl|hg17|chr6 (90378687-90378817)
               

               
               836-944, gnl|Hg17|chr6 (90378710-90378818)
               

               
               836-944, gnl|loxAfr1|scaffold_4683 (91277-91407)
               

               
               836-944, gnl|mm7|chr4 (33102925-33102796)
               

               
               836-944, gnl|Mm7|chr4 (33102901-33102793)
               

               
               836-944, gnl|monDom2|scaffold_0 (138744451-138744318)
               

               
               836-944, gnl|oryCun1|scaffold_131407 (8001-8130)
               

               
               836-944, gnl|panTro1|chr5 (92089116-92089246)
               

               
               836-944, gnl|rheMac2|chr4 (85472865-85472995)
               

               
               836-944, gnl|rn3|chr5 (49120409-49120278)
               

               
               836-944, gnl|tetNig1|chrUn_random (24503526-24503438)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-540, gnl|bosTau2|chr9 (33979419-33978920)
               

               
               55-540, gnl|Hg17|chr6 (90333032-90333534)
               


               
               836-944, gnl|bosTau2|chr9 (33403009-33402901)
               

               
               836-944, gnl|canFam2|chr12 (51818208-51818338)
               

               
               836-944, gnl|danRer3|chr20 (1622207-1622077)
               

               
               836-944, gnl|dasNov1|scaffold_10103 (48955-49084)
               

               
               836-944, gnl|echTel1|scaffold_224759 (3986-3856)
               

               
               836-944, gnl|fr1|chrUn (312499673-312499550)
               

               
               836-944, gnl|galGal2|chr3 (73899233-73899109)
               

               
               836-944, gnl|hg17|chr6 (90378687-90378817)
               

               
               836-944, gnl|Hg17|chr6 (90378710-90378818)
               

               
               836-944, gnl|loxAfr1|scaffold_4683 (91277-91407)
               

               
               836-944, gnl|mm7|chr4 (33102925-33102796)
               

               
               836-944, gnl|Mm7|chr4 (33102901-33102793)
               

               
               836-944, gnl|monDom2|scaffold_0 (138744451-138744318)
               

               
               836-944, gnl|oryCun1|scaffold_131407 (8001-8130)
               

               
               836-944, gnl|panTro1|chr5 (92089116-92089246)
               

               
               836-944, gnl|rheMac2|chr4 (85472865-85472995)
               

               
               836-944, gnl|rn3|chr5 (49120409-49120278)
               

               
               836-944, gnl|tetNig1|chrUn_random (24503526-24503438)

	55-540, gnl\|bosTau2\|chr9 (33979419-33978920)
	55-540, gnl\|Hg17\|chr6 (90333032-90333534)

	836-944, gnl\|bosTau2\|chr9 (33403009-33402901)
	836-944, gnl\|canFam2\|chr12 (51818208-51818338)
	836-944, gnl\|danRer3\|chr20 (1622207-1622077)
	836-944, gnl\|dasNov1\|scaffold_10103 (48955-49084)
	836-944, gnl\|echTel1\|scaffold_224759 (3986-3856)
	836-944, gnl\|fr1\|chrUn (312499673-312499550)
	836-944, gnl\|galGal2\|chr3 (73899233-73899109)
	836-944, gnl\|hg17\|chr6 (90378687-90378817)
	836-944, gnl\|Hg17\|chr6 (90378710-90378818)
	836-944, gnl\|loxAfr1\|scaffold_4683 (91277-91407)
	836-944, gnl\|mm7\|chr4 (33102925-33102796)
	836-944, gnl\|Mm7\|chr4 (33102901-33102793)
	836-944, gnl\|monDom2\|scaffold_0 (138744451-138744318)
	836-944, gnl\|oryCun1\|scaffold_131407 (8001-8130)
	836-944, gnl\|panTro1\|chr5 (92089116-92089246)
	836-944, gnl\|rheMac2\|chr4 (85472865-85472995)
	836-944, gnl\|rn3\|chr5 (49120409-49120278)
	836-944, gnl\|tetNig1\|chrUn_random (24503526-24503438)