Non-Coding RNA Search

Ss1.1-Pig2-85C03.5

Sequence:


               
               GGATTGTCCCTGGCAAACAGAGATGTATGGGTCACTCTATTTATAGCACGTCCTGACCTC
TTTCATTCCCTTGAGCATGTTAGAGGTGATGATGTCAGGCAGGCAACTGAGTCACTGGGA
GGAGCAAAGTATTCTCTAACAGGCCACTACTGTCCTGGCAGGTGTCTTCTTTATCTACCC
GTAGCCAGTTGAAAAAAGCTTGTCTTTGGCCCATATGCTCACTGCTTAGCTTAGAACTGT
TTCCTTAAGCAAATGAAAGCACACAGAAGCACCAAAGTTATTAAGACTCATTATCTTGTA
GTGCTTTGCCTCTTGGGTAGCAGGGATTAACCAAGTCCTAGACTTTTGACTGCTGTTTTA
GATGAAGTAGTCAAGAATCTTTTCTGCAGAAACATCCTTTCCTGTGAAAGGTAGAGAATG
GCCTGGCTCTGCAGTATTGGTCTGGAGTGCCCTTTCCAGAGGGAGGGCTGGGCTTCAAAG
AAGAGCCAAATTTCGCAGGAACGAGAGAGCCATGCTGGCCAATAAGAACGCTTCCCTCCT
CAAATCCTACTCAGGAGACGTGACTGCCGTGGAGCAGCCCATCGTACCTCGTCCTGCTCC
AAGACCCACCGATTATCTCTCCTGGGGGACGGCCTCTCCTTACAGATCCTCGTCCCTCCC
AAGATGTTGTTTACACGAGGGGCTTCATAACGGATTCTAACGGAAGACACTGAAAAGCGC
CATGGCTACTTACTCTGCCACATGTGCCAACAATAGCCCTGCACAGGGCATCAACATGGC
CAACAGCATTGCCAACCTGAGACTGAAGGCCAAGGAATATAGTTTACAGAGGAACCAGGT
GCCAACAGTCCACTGAGGAAAAAAATATTTAAACAGGCCTAAGAAGAAATCAAAAACCAT
AAGACACCTATCCTGCTCTGTCATTTCTTCATCGCTGGGAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTGTCCCTGGCAAACAGAGATGTATGGGTCACTCTATTTATAGCACGTCCTGACCTC
TTTCATTCCCTTGAGCATGTTAGAGGTGATGATGTCAGGCAGGCAACTGAGTCACTGGGA
GGAGCAAAGTATTCTCTAACAGGCCACTACTGTCCTGGCAGGTGTCTTCTTTATCTACCC
GTAGCCAGTTGAAAAAAGCTTGTCTTTGGCCCATATGCTCACTGCTTAGCTTAGAACTGT
TTCCTTAAGCAAATGAAAGCACACAGAAGCACCAAAGTTATTAAGACTCATTATCTTGTA
GTGCTTTGCCTCTTGGGTAGCAGGGATTAACCAAGTCCTAGACTTTTGACTGCTGTTTTA
GATGAAGTAGTCAAGAATCTTTTCTGCAGAAACATCCTTTCCTGTGAAAGGTAGAGAATG
GCCTGGCTCTGCAGTATTGGTCTGGAGTGCCCTTTCCAGAGGGAGGGCTGGGCTTCAAAG
AAGAGCCAAATTTCGCAGGAACGAGAGAGCCATGCTGGCCAATAAGAACGCTTCCCTCCT
CAAATCCTACTCAGGAGACGTGACTGCCGTGGAGCAGCCCATCGTACCTCGTCCTGCTCC
AAGACCCACCGATTATCTCTCCTGGGGGACGGCCTCTCCTTACAGATCCTCGTCCCTCCC
AAGATGTTGTTTACACGAGGGGCTTCATAACGGATTCTAACGGAAGACACTGAAAAGCGC
CATGGCTACTTACTCTGCCACATGTGCCAACAATAGCCCTGCACAGGGCATCAACATGGC
CAACAGCATTGCCAACCTGAGACTGAAGGCCAAGGAATATAGTTTACAGAGGAACCAGGT
GCCAACAGTCCACTGAGGAAAAAAATATTTAAACAGGCCTAAGAAGAAATCAAAAACCAT
AAGACACCTATCCTGCTCTGTCATTTCTTCATCGCTGGGAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|24429584|ref|NP_722543.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|24429584|ref|NP_722543.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               755-872, - strand, RNAz p=0.836726

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               755-872, - strand, RNAz p=0.836726

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-552, gnl|bosTau2|chr16 (26597436-26597993)
               

               
               1-552, gnl|Hg17|chr1 (167430422-167430981)
               

               
               1-552, gnl|Mm7|chr1 (163215683-163215146)
               


               
               716-946, gnl|bosTau2|chr16 (26603873-26604105)
               

               
               716-946, gnl|Hg17|chr1 (167436845-167437076)
               

               
               716-946, gnl|Mm7|chr1 (163209403-163209170)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr16 (26597436-26597993)
               

               
               1-552, gnl|Hg17|chr1 (167430422-167430981)
               

               
               1-552, gnl|Mm7|chr1 (163215683-163215146)
               


               
               716-946, gnl|bosTau2|chr16 (26603873-26604105)
               

               
               716-946, gnl|Hg17|chr1 (167436845-167437076)
               

               
               716-946, gnl|Mm7|chr1 (163209403-163209170)

	1-552, gnl\|bosTau2\|chr16 (26597436-26597993)
	1-552, gnl\|Hg17\|chr1 (167430422-167430981)
	1-552, gnl\|Mm7\|chr1 (163215683-163215146)

	716-946, gnl\|bosTau2\|chr16 (26603873-26604105)
	716-946, gnl\|Hg17\|chr1 (167436845-167437076)
	716-946, gnl\|Mm7\|chr1 (163209403-163209170)