Non-Coding RNA Search

Ss1.1-Pig2-86G17.5

Sequence:


               
               GTCCAGGCTTGAGGAGCCAGGTCCCAGGACAGCCCCCACCCCACGACCCCGGACCCTGCC
TGGCAGAAGGAGGGGCTGGGATTGTCCACGGACCCTGCCAGGGGTAGTGGCCACGGCTTC
CCAGCCCAGGAACAGCTTGATGCCAGAGCAGGAAGGGGCGGCTCTGCAAAGACTGGAGGC
CACGGGCTGCAGCCCAGAAAAGGGAGGAGCTGGGGTCCCCTGTGCTCTGGGACTTGCTCC
AGCCAGGACCCGGGAGCCCCCCACTGCTGAGACCCCCCCAGAGGAGATGCTTAAGGACTC
TGGACACGATGCCCAGCCCTGCAGAGGGGAGCACCCGGGTCAGTGTAATGCTGGCCTGGG
CCACACGGGGCACGGTGCCACCACCCAGCGGATGGACAGCCTGGAGGAGACACTTCGGGA
GCTGGAAGCCACCCTGAACCAGTTGGGCACAGACCCTGCCACAGGGCCCGCTGGCAGCCC
CCCACCCCCGGCCCCTGGTCCCCAGGTGGCTGCCTCCTCCCCCATCTTCTCCTCTTGTCT
TCAGGCTCCAGTCTCTTCTGAGCTGGAGGGAGTGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCAGGCTTGAGGAGCCAGGTCCCAGGACAGCCCCCACCCCACGACCCCGGACCCTGCC
TGGCAGAAGGAGGGGCTGGGATTGTCCACGGACCCTGCCAGGGGTAGTGGCCACGGCTTC
CCAGCCCAGGAACAGCTTGATGCCAGAGCAGGAAGGGGCGGCTCTGCAAAGACTGGAGGC
CACGGGCTGCAGCCCAGAAAAGGGAGGAGCTGGGGTCCCCTGTGCTCTGGGACTTGCTCC
AGCCAGGACCCGGGAGCCCCCCACTGCTGAGACCCCCCCAGAGGAGATGCTTAAGGACTC
TGGACACGATGCCCAGCCCTGCAGAGGGGAGCACCCGGGTCAGTGTAATGCTGGCCTGGG
CCACACGGGGCACGGTGCCACCACCCAGCGGATGGACAGCCTGGAGGAGACACTTCGGGA
GCTGGAAGCCACCCTGAACCAGTTGGGCACAGACCCTGCCACAGGGCCCGCTGGCAGCCC
CCCACCCCCGGCCCCTGGTCCCCAGGTGGCTGCCTCCTCCCCCATCTTCTCCTCTTGTCT
TCAGGCTCCAGTCTCTTCTGAGCTGGAGGGAGTGGG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               42-161, - strand, RNAz p=0.769891
               

               
               242-351, - strand, RNAz p=0.52695
               

               
               430-540, - strand, RNAz p=0.952394

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-161, - strand, RNAz p=0.769891
               

               
               242-351, - strand, RNAz p=0.52695
               

               
               430-540, - strand, RNAz p=0.952394

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               444-588, - strand, RNAmicro p=1
               

               
               442-555, + strand, RNAmicro p=0.990011
               

               
               4-133, - strand, RNAmicro p=0.989695

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               444-588, - strand, RNAmicro p=1
               

               
               442-555, + strand, RNAmicro p=0.990011
               

               
               4-133, - strand, RNAmicro p=0.989695

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-351, gnl|bosTau2|chr19 (33423868-33424216)
               

               
               3-351, gnl|Hg17|chr17 (33955138-33954790)
               

               
               3-351, gnl|Mm7|chr11 (97629130-97628785)
               


               
               376-544, gnl|bosTau2|chr19 (33424214-33424378)
               

               
               376-544, gnl|Hg17|chr17 (33954792-33954585)
               

               
               376-544, gnl|Mm7|chr11 (97628787-97628590)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-351, gnl|bosTau2|chr19 (33423868-33424216)
               

               
               3-351, gnl|Hg17|chr17 (33955138-33954790)
               

               
               3-351, gnl|Mm7|chr11 (97629130-97628785)
               


               
               376-544, gnl|bosTau2|chr19 (33424214-33424378)
               

               
               376-544, gnl|Hg17|chr17 (33954792-33954585)
               

               
               376-544, gnl|Mm7|chr11 (97628787-97628590)

	42-161, - strand, RNAz p=0.769891
	242-351, - strand, RNAz p=0.52695
	430-540, - strand, RNAz p=0.952394

	444-588, - strand, RNAmicro p=1
	442-555, + strand, RNAmicro p=0.990011
	4-133, - strand, RNAmicro p=0.989695

	3-351, gnl\|bosTau2\|chr19 (33423868-33424216)
	3-351, gnl\|Hg17\|chr17 (33955138-33954790)
	3-351, gnl\|Mm7\|chr11 (97629130-97628785)

	376-544, gnl\|bosTau2\|chr19 (33424214-33424378)
	376-544, gnl\|Hg17\|chr17 (33954792-33954585)
	376-544, gnl\|Mm7\|chr11 (97628787-97628590)