Non-Coding RNA Search

Ss1.1-Pig2-86K18.5

Sequence:


               
               GGAAGGGTGAAGGCTGAGGGCTCCGCCTTTCTGAGTTGCGCAAACTAGGCGACTGGAAGC
GAAGACCGGGTCTTAGTCGGGGAGTGGGCTGAGGGCCCGTACTTCTGGCGGGGGAGTGGG
TGCAAGTCTCCCAGACTCCTGCGGGGTGGGGCCTGGACTCCTGAGTCTGAAGTGGGGGGC
CGAGATCGGAACCTTTGGATCCCTGATAAGCGAGGGGGTTATTGACTTCGTGGCTCCTCG
GGGAAAGGGGCTGGGGACTCGGATGCCTGGTTTCCCGAAGAAGGAGTATCAGGGCAGAGA
ACCTGCATGTGTGTCTCCGGAGAGTGATGCCCAGCGACGCCCCGAATCCTTCAGCCCTGG
GAGATCAAGGGGTGGGATTTTTCACGGAAGTGGCGGAGCAGGGGGTTGCAGAGGGCGCCC
TCCACCCCCTTCCTCAGTTTCCACGACGCTGGTGGAAAGTTGGGTCAGAGGGGAAAGTGC
GGAGCAAAAGGAAGGAAATGGCGGAGGCGGCGCCACACCCGAAATCTTAAATTGGCTTGG
GAGCTCTCTGGCGACATCAGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGGTGAAGGCTGAGGGCTCCGCCTTTCTGAGTTGCGCAAACTAGGCGACTGGAAGC
GAAGACCGGGTCTTAGTCGGGGAGTGGGCTGAGGGCCCGTACTTCTGGCGGGGGAGTGGG
TGCAAGTCTCCCAGACTCCTGCGGGGTGGGGCCTGGACTCCTGAGTCTGAAGTGGGGGGC
CGAGATCGGAACCTTTGGATCCCTGATAAGCGAGGGGGTTATTGACTTCGTGGCTCCTCG
GGGAAAGGGGCTGGGGACTCGGATGCCTGGTTTCCCGAAGAAGGAGTATCAGGGCAGAGA
ACCTGCATGTGTGTCTCCGGAGAGTGATGCCCAGCGACGCCCCGAATCCTTCAGCCCTGG
GAGATCAAGGGGTGGGATTTTTCACGGAAGTGGCGGAGCAGGGGGTTGCAGAGGGCGCCC
TCCACCCCCTTCCTCAGTTTCCACGACGCTGGTGGAAAGTTGGGTCAGAGGGGAAAGTGC
GGAGCAAAAGGAAGGAAATGGCGGAGGCGGCGCCACACCCGAAATCTTAAATTGGCTTGG
GAGCTCTCTGGCGACATCAGTGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               171-276, + strand, RNAz p=0.986566
               

               
               396-522, - strand, RNAz p=0.977181

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               171-276, + strand, RNAz p=0.986566
               

               
               396-522, - strand, RNAz p=0.977181

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               5-564, gnl|bosTau2|chr18 (41707052-41706447)
               

               
               5-564, gnl|Mm7|chr7 (27365638-27366491)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-564, gnl|bosTau2|chr18 (41707052-41706447)
               

               
               5-564, gnl|Mm7|chr7 (27365638-27366491)

	171-276, + strand, RNAz p=0.986566
	396-522, - strand, RNAz p=0.977181

	5-564, gnl\|bosTau2\|chr18 (41707052-41706447)
	5-564, gnl\|Mm7\|chr7 (27365638-27366491)