Non-Coding RNA Search

Ss1.1-Pig2-87E10.5

Sequence:


               
               GCGGCCGCTGCCGCCCTGGAGGAGCACCGGCGCGCCACCACGGCGAGGGCGGCGGCGCGG
AGTCGACGGCGCCGGCCCCGGAGGGGAGCCCGCGTCTGGGGAGCCCGCGGCCGGCTCCGG
CCGCGGCAAGAAGATCTTCGGCTGCTCCGAGTGCGAGAAGCTGTTCCGCTCGCCGCGGGA
CCTGGAGCGGCACGTGCTGGTGCACACAGGCGAGAAGCCGTTCCCGTGCCTGGAGTGCGG
CAAGTTCTTCCGCCACGAGTGCTACCTCAAGCGCCACCGGCTGCTCCACGGCACCGAGCG
GCCCTTCCCCTGCCACATCTGCGGCAAGGGCTTCATCACGCTCAGCAACCTCTCCAGGCA
CCTGAAGCTGCACCGGGGCATGGACTGACATGGCCAGGCGGCGCGCCCCTCCATCCGACC
ACCCCTACCAGGGGCTGGCCTCAGGGCCCAGGGGCCAGGGGACCTAGGAACCGCAAGGGA
GGCCCCGGCCCTCCACATCCAGACCCGGGCCCCGAGATGAGGGGACCCTGGCTGGAGAGA
TGGGGCCACCGAACGTCCCCAGGCCCCTGAGCTAAGGGGCAGCAAATAAATGGAGAGACG
TCTCAGCTCGAGAGTCCCAGATCTATGGAGAGGCTCCTGAAAGCAAGGCTCCTGGGACAC
GTGCTGAGCACCCCTCAATCAGTAGGCTCCTAAGTCATGGGGCCCTAGGCCTGAGACATG
GGTCTCCCTACCTACTTCTCATCTTGAGGCCCTAATAATAAAAGATGGGCACCCCTCCCC
CAAGGGAAGACTGCCCCTCTCCCTAAGAGCCATCATTCCAACGACCTTAATCTGGAGAAA
AGTGGGGGAACCATGTCCCCAGATTTCCCTGGATTCCCTCCAAACGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGCCGCCCTGGAGGAGCACCGGCGCGCCACCACGGCGAGGGCGGCGGCGCGG
AGTCGACGGCGCCGGCCCCGGAGGGGAGCCCGCGTCTGGGGAGCCCGCGGCCGGCTCCGG
CCGCGGCAAGAAGATCTTCGGCTGCTCCGAGTGCGAGAAGCTGTTCCGCTCGCCGCGGGA
CCTGGAGCGGCACGTGCTGGTGCACACAGGCGAGAAGCCGTTCCCGTGCCTGGAGTGCGG
CAAGTTCTTCCGCCACGAGTGCTACCTCAAGCGCCACCGGCTGCTCCACGGCACCGAGCG
GCCCTTCCCCTGCCACATCTGCGGCAAGGGCTTCATCACGCTCAGCAACCTCTCCAGGCA
CCTGAAGCTGCACCGGGGCATGGACTGACATGGCCAGGCGGCGCGCCCCTCCATCCGACC
ACCCCTACCAGGGGCTGGCCTCAGGGCCCAGGGGCCAGGGGACCTAGGAACCGCAAGGGA
GGCCCCGGCCCTCCACATCCAGACCCGGGCCCCGAGATGAGGGGACCCTGGCTGGAGAGA
TGGGGCCACCGAACGTCCCCAGGCCCCTGAGCTAAGGGGCAGCAAATAAATGGAGAGACG
TCTCAGCTCGAGAGTCCCAGATCTATGGAGAGGCTCCTGAAAGCAAGGCTCCTGGGACAC
GTGCTGAGCACCCCTCAATCAGTAGGCTCCTAAGTCATGGGGCCCTAGGCCTGAGACATG
GGTCTCCCTACCTACTTCTCATCTTGAGGCCCTAATAATAAAAGATGGGCACCCCTCCCC
CAAGGGAAGACTGCCCCTCTCCCTAAGAGCCATCATTCCAACGACCTTAATCTGGAGAAA
AGTGGGGGAACCATGTCCCCAGATTTCCCTGGATTCCCTCCAAACGCT

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               215-414, - strand, RNAz p=0.984919
               

               
               453-601, - strand, RNAz p=0.99927
               

               
               761-874, - strand, RNAz p=0.964545

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-414, - strand, RNAz p=0.984919
               

               
               453-601, - strand, RNAz p=0.99927
               

               
               761-874, - strand, RNAz p=0.964545

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               429-540, - strand, RNAmicro p=0.998064
               

               
               104-218, - strand, RNAmicro p=0.94148

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               429-540, - strand, RNAmicro p=0.998064
               

               
               104-218, - strand, RNAmicro p=0.94148

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               215-389, xm79b08.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE 
(gb|AW275332.1|), blast E-value=0, identity=98.86% 
               

               
               215-389, hl66e03.x1 NCI_CGAP_Kid13 Homo sapiens cDNA clone IMAGE 
(gb|AW768935.1|), blast E-value=0, identity=98.86% 
               

               
               215-389, 601298878F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE383069.1|), 
blast E-value=0, identity=98.86% 
               

               
               215-389, 601286583F1 NIH_MGC_44 Homo sapiens cDNA clone IMAGE (gb|BE390864.1|), 
blast E-value=0, identity=98.86% 
               

               
               215-389, 601432408F1 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb|BE897567.1|), 
blast E-value=0, identity=98.86% 
               

               
               215-389, 602738792F1 NIH_MGC_49 Homo sapiens cDNA clone IMAGE (gb|BG765347.1|), 
blast E-value=0, identity=98.86%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               215-389, xm79b08.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE 
(gb|AW275332.1|), blast E-value=0, identity=98.86% 
               

               
               215-389, hl66e03.x1 NCI_CGAP_Kid13 Homo sapiens cDNA clone IMAGE 
(gb|AW768935.1|), blast E-value=0, identity=98.86% 
               

               
               215-389, 601298878F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE383069.1|), 
blast E-value=0, identity=98.86% 
               

               
               215-389, 601286583F1 NIH_MGC_44 Homo sapiens cDNA clone IMAGE (gb|BE390864.1|), 
blast E-value=0, identity=98.86% 
               

               
               215-389, 601432408F1 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb|BE897567.1|), 
blast E-value=0, identity=98.86% 
               

               
               215-389, 602738792F1 NIH_MGC_49 Homo sapiens cDNA clone IMAGE (gb|BG765347.1|), 
blast E-value=0, identity=98.86%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               19-888, gnl|bosTau2|chr18 (54687637-54688502)
               

               
               19-888, gnl|Hg17|chr19 (60795972-60795137)
               

               
               19-888, gnl|Mm7|chr7 (4583761-4583032)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-888, gnl|bosTau2|chr18 (54687637-54688502)
               

               
               19-888, gnl|Hg17|chr19 (60795972-60795137)
               

               
               19-888, gnl|Mm7|chr7 (4583761-4583032)

	215-414, - strand, RNAz p=0.984919
	453-601, - strand, RNAz p=0.99927
	761-874, - strand, RNAz p=0.964545

	429-540, - strand, RNAmicro p=0.998064
	104-218, - strand, RNAmicro p=0.94148

	215-389, xm79b08.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE (gb\|AW275332.1\|), blast E-value=0, identity=98.86%
	215-389, hl66e03.x1 NCI_CGAP_Kid13 Homo sapiens cDNA clone IMAGE (gb\|AW768935.1\|), blast E-value=0, identity=98.86%
	215-389, 601298878F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb\|BE383069.1\|), blast E-value=0, identity=98.86%
	215-389, 601286583F1 NIH_MGC_44 Homo sapiens cDNA clone IMAGE (gb\|BE390864.1\|), blast E-value=0, identity=98.86%
	215-389, 601432408F1 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb\|BE897567.1\|), blast E-value=0, identity=98.86%
	215-389, 602738792F1 NIH_MGC_49 Homo sapiens cDNA clone IMAGE (gb\|BG765347.1\|), blast E-value=0, identity=98.86%

	19-888, gnl\|bosTau2\|chr18 (54687637-54688502)
	19-888, gnl\|Hg17\|chr19 (60795972-60795137)
	19-888, gnl\|Mm7\|chr7 (4583761-4583032)